Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 4315.4 2242 100.0
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 4177.9 2242 97.5
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 4170.5 2247 97.1
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 4055.0 2287 93.6
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 4028.4 2242 94.6
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 3753.8 2246 88.7
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 3278.4 2246 78.6
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 3064.6 2240 74.6
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2684.1 2261 66.1
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2650.2 2254 65.5
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2619.0 2285 63.6
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2611.6 1478 94.2
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2587.8 2256 63.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2562.3 2292 64.2
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2551.9 2270 63.1
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2535.8 2271 63.3
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2527.3 2274 62.5
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2505.7 2267 62.4
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2498.0 2277 62.3
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2471.0 1346 96.6
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2456.8 2269 61.0
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2433.3 2321 60.5
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2426.4 2277 60.4
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2424.0 2262 60.0
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2411.3 2265 61.8
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2407.9 2269 60.4
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2407.1 2260 59.8
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2405.9 2270 60.1
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2402.9 2266 60.4
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2397.1 2262 59.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2379.4 2266 59.5
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2366.7 2268 58.8
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2365.1 2269 59.3
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2348.9 2381 57.6
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2344.3 2266 58.9
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2344.3 2262 59.2
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2332.4 2291 58.7
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2310.0 2266 58.7
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2306.6 2301 57.9
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2267.3 2253 58.4
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2248.4 2243 58.0
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2241.8 2244 58.1
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2230.7 2263 57.2
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2208.3 2271 57.5
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2156.3 2326 54.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2154.4 2277 55.9
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2150.9 2182 56.6
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2142.9 2349 54.8
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2135.5 2079 58.5
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2134.0 1437 77.2
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2122.4 2079 58.2
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2107.8 2289 54.9
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2100.5 1767 65.3
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2069.7 2327 53.2
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2069.7 2303 54.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2058.5 2272 53.0
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2056.2 2327 52.7
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2028.4 2225 52.9
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2016.1 2266 52.8
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2015.4 2264 52.6
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2008.8 2266 52.7
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1997.2 2280 52.2
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1987.6 2280 52.0
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1985.3 2267 51.9
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1982.2 2245 52.7
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1976.4 2265 52.2
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1974.1 2295 51.7
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1964.5 2260 52.4
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1964.1 2250 51.9
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1963.0 2263 51.7
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1962.6 2278 51.5
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1961.0 1979 56.7
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1959.9 2288 52.1
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1953.3 2266 51.5
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1948.3 2285 51.6
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1941.0 2238 52.4
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1939.5 2272 52.4
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1938.3 2263 51.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1935.2 2282 51.1
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1917.1 2201 51.9
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1913.3 2271 50.6
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1907.1 2170 52.1
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1873.6 2242 50.0
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1861.7 2228 52.0
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1844.3 2198 52.0
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1795.0 2252 49.6
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1786.2 1482 65.2
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1756.5 2230 49.7
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1737.2 1453 64.0
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1736.9 1452 63.9
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1701.4 2393 46.0
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1475.3 2251 44.6
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1444.1 2309 42.6
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1370.1 1309 56.5
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1261.5 2266 40.2
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1239.6 1684 48.7
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1099.0 1289 53.2
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 0.0e+00 1086.6 1287 52.4
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 2.6e-301 1040.0 1393 48.7
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 5.2e-294 1015.8 822 65.8
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 6.2e-279 965.7 1168 47.3
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.9e-260 902.9 1359 43.9
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 6.2e-194 683.3 845 55.1
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-187 662.5 999 44.8
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.6e-179 633.6 2511 28.1
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.9e-175 621.3 494 64.6
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 9.3e-166 589.7 1047 43.2
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.6e-162 578.9 808 51.7
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.6e-162 578.9 808 51.7
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.4e-161 575.1 949 45.4
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 8.7e-140 503.4 1031 36.6
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 9.3e-134 483.4 430 69.8
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.7e-133 481.9 432 56.9
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 7.7e-128 463.8 350 70.0
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 2.5e-126 458.8 2282 26.7
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.3e-121 441.0 902 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 3.2e-118 431.8 1438 28.2
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 5.7e-115 421.0 656 41.9
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 2.7e-109 402.1 223 91.0
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.0e-92 347.1 288 60.1
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 3.5e-88 332.0 300 61.0
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 7.8e-88 330.9 1921 23.8
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.3e-76 292.7 379 43.5
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.3e-74 287.0 329 49.8
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 4.3e-70 271.9 459 43.6
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 9.5e-70 270.8 163 84.7
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-69 270.0 318 48.7
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-61 243.8 153 79.1
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 4.7e-53 215.3 464 40.7
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 9.0e-52 211.1 189 72.5
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.7e-50 206.8 693 35.5
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 2.4e-49 203.0 266 50.8
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 3.5e-48 199.1 136 69.1
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 1.8e-44 186.8 329 38.6
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.9e-42 178.7 112 80.4
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 4.2e-41 175.6 208 47.1
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 3.7e-37 162.5 178 57.3
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 9.3e-33 147.9 118 61.9
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.7e-29 136.0 335 35.2
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.2e-29 134.8 596 26.8
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.0e-28 132.5 252 34.1
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.6e-24 120.6 400 34.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-22 113.2 68 76.5
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 4.3e-22 112.5 128 54.7
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.7e-18 100.5 303 35.6
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.9e-17 97.1 97 63.9
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.9e-14 87.0 194 35.6
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.4e-12 80.9 65 70.8
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.4e-12 80.1 133 31.6
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 4.5e-11 75.9 78 57.7
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-10 73.6 104 48.1
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-10 73.2 128 40.6
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-09 70.5 104 47.1
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 2.5e-09 70.1 117 41.9
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 4.2e-09 69.3 45 75.6
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-08 67.4 78 43.6
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 2.7e-08 66.6 60 65.0
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 1.0e-07 64.7 56 66.1
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.0e-07 63.2 129 38.0
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 2.6e-06 60.1 95 37.9
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 9.7e-06 58.2 65 49.2


User provided reference genes

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