Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1389.4 956 100.0
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1384.0 956 99.7
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1367.1 956 99.0
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 0.0e+00 1361.3 956 98.6
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1357.4 956 98.3
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 0.0e+00 1278.8 958 94.3
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 9.0e-304 1047.0 955 82.0
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 4.2e-293 1011.5 948 80.9
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 3.6e-276 955.3 957 76.7
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.4e-274 948.3 960 76.1
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 4.4e-274 948.3 934 77.5
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 7.5e-274 947.6 938 76.8
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 3.7e-273 945.3 960 74.0
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 7.0e-272 941.0 934 78.1
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.2e-270 936.0 932 77.1
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.9e-270 935.6 945 76.5
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 7.2e-269 931.0 940 76.9
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.2e-268 930.2 932 76.8
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.4e-267 926.8 972 72.1
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 1.8e-267 926.4 961 74.4
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 1.2e-266 923.7 958 75.8
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 4.4e-266 921.8 945 75.9
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 8.3e-265 917.5 951 75.9
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.1e-264 917.1 957 75.2
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.6e-263 913.3 933 75.9
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 3.3e-261 905.6 950 75.3
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 4.2e-261 905.2 996 60.3
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.0e-259 900.6 956 72.9
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.8e-259 899.8 956 63.8
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 4.4e-258 895.2 1130 66.5
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 3.1e-256 889.0 956 74.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 9.2e-256 887.5 949 73.9
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.2e-255 887.1 938 64.6
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 2.7e-255 885.9 931 73.5
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 4.5e-255 885.2 956 73.8
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 7.8e-255 884.4 947 73.3
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 2.5e-253 879.4 950 73.2
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 2.1e-252 876.3 957 72.8
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 2.1e-252 876.3 956 72.4
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 6.8e-251 871.3 956 73.7
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.5e-250 870.2 947 71.0
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 2.6e-250 869.4 956 73.5
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 5.8e-250 868.2 985 71.5
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 9.8e-250 867.5 936 74.0
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.9e-249 865.9 960 72.0
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 3.7e-249 865.5 957 72.0
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 6.4e-249 864.8 965 72.3
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 1.0e-246 857.4 956 72.3
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 6.6e-246 854.7 956 72.5
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 4.3e-245 852.0 953 62.9
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 2.8e-244 849.4 955 71.8
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 4.7e-244 848.6 950 65.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.8e-243 846.7 934 72.2
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 1.2e-242 844.0 948 71.8
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 2.6e-242 842.8 959 72.6
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 7.5e-242 841.3 961 65.8
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.3e-241 840.5 959 70.8
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.7e-241 840.1 959 70.7
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.1e-240 837.4 969 66.7
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 3.2e-240 835.9 959 70.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 1.7e-238 830.1 939 69.1
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 2.5e-237 826.2 960 70.8
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 4.3e-237 825.5 938 71.7
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 5.6e-237 825.1 962 67.6
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.1e-236 823.2 931 70.7
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 4.7e-236 822.0 956 70.9
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 2.3e-235 819.7 938 69.7
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.2e-234 817.4 958 69.6
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 2.6e-234 816.2 746 74.7
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 5.8e-234 815.1 956 70.7
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 7.5e-234 814.7 959 68.8
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 6.4e-233 811.6 948 70.8
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 5.4e-232 808.5 938 67.9
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 7.1e-232 808.1 967 67.1
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 7.1e-232 808.1 959 68.3
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 9.2e-232 807.7 935 68.3
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 9.2e-232 807.7 954 67.2
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 7.8e-231 804.7 958 70.1
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 2.3e-230 803.1 959 69.6
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.2e-228 797.3 983 57.5
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 2.4e-227 793.1 967 65.7
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 6.8e-227 791.6 961 68.7
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 9.9e-226 787.7 959 68.3
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 4.9e-225 785.4 959 68.2
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 8.4e-225 784.6 959 68.1
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.1e-223 780.0 959 67.9
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.0e-222 777.7 959 67.9
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.5e-221 773.1 965 67.6
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.6e-220 770.4 974 47.9
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.2e-216 755.7 959 67.6
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.6e-214 748.4 886 69.6
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.1e-212 743.4 961 68.1
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 2.6e-210 736.5 966 66.5
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 9.9e-210 734.6 955 67.0
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 2.9e-209 733.0 820 75.2
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.9e-209 733.0 959 63.9
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.6e-204 717.2 962 64.7
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 3.7e-204 716.1 1025 58.0
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.1e-203 714.5 865 69.7
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 3.1e-203 713.0 956 62.9
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 4.0e-203 712.6 921 64.5
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.8e-196 689.9 597 84.4
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.0e-193 681.4 937 63.2
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 8.2e-172 608.6 952 52.8
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 3.8e-169 599.7 727 62.9
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.7e-167 593.6 868 62.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 2.6e-157 560.5 946 55.5
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 7.0e-155 552.4 959 56.9
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 3.5e-154 550.1 988 56.7
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 9.4e-152 542.0 965 53.2
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 9.4e-152 542.0 965 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 5.4e-147 526.2 952 54.3
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 1.1e-120 438.7 592 45.6
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.5e-120 437.6 655 44.1
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 1.7e-100 371.7 951 46.9
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 3.9e-97 360.5 299 64.2
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 5.6e-96 356.7 952 42.1
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 2.1e-66 258.5 753 41.3
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.8e-46 192.2 135 67.4
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.7e-45 188.3 130 70.0
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 6.5e-44 183.7 183 54.1
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.3e-41 175.3 125 67.2
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 7.7e-37 160.2 125 61.6
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 2.7e-34 151.8 128 61.7
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.8e-33 146.7 193 45.6
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-28 132.9 125 55.2
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 8.6e-28 130.2 126 53.2
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 9.8e-24 116.7 81 74.1
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 3.9e-20 104.8 82 67.1
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 8.0e-18 97.1 90 57.8
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 8.0e-18 97.1 88 52.3
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 8.9e-17 93.6 91 54.9
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.6e-16 92.0 67 70.1
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.2e-14 83.6 92 48.9
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.6e-13 82.8 71 63.4
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 2.0e-13 82.4 77 58.4
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 2.0e-13 82.4 55 76.4
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.3e-11 75.1 103 51.5
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 3.4e-08 65.1 45 68.9
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.7e-07 62.8 61 57.4
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 2.9e-07 62.0 154 29.2
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 2.9e-07 62.0 154 29.2
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 4.9e-07 61.2 136 25.7
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 1.4e-06 59.7 136 25.0
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 1.4e-06 59.7 143 26.6
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 1.4e-06 59.7 120 30.0
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.9e-06 59.3 84 42.9
FvH4_4g00520 Fragaria vesca HOM05D000836 ORTHO05D000709 5.4e-06 57.8 126 27.8
FAN17G0254 Fragaria x ananassa HOM05D000836 ORTHO05D000709 5.4e-06 57.8 126 28.6
FAN22G1004 Fragaria x ananassa HOM05D000836 ORTHO05D000709 5.4e-06 57.8 126 27.8
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 9.2e-06 57.0 173 26.0


User provided reference genes

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