Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.2e-198 694.5 354 100.0
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 4.1e-177 624.8 359 89.4
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.5e-163 579.7 354 85.3
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 4.6e-152 541.6 365 76.2
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.5e-142 510.0 367 74.7
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.4e-140 503.4 259 96.1
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.9e-140 500.7 354 76.0
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.1e-134 483.8 372 69.9
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.1e-134 483.8 372 69.9
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.1e-132 477.2 378 69.0
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 9.0e-132 474.2 377 65.8
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 9.9e-131 470.7 355 68.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.3e-130 470.3 359 69.1
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.3e-130 470.3 367 68.9
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 3.8e-130 468.8 365 68.2
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 2.4e-129 466.1 362 68.2
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 7.8e-128 461.1 372 67.2
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.0e-127 460.7 315 73.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.9e-127 458.8 383 63.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.1e-126 457.2 384 63.0
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 3.3e-126 455.7 355 67.3
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 5.6e-126 454.9 360 67.5
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 2.8e-125 452.6 369 64.8
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.6e-125 452.2 369 64.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 6.2e-125 451.4 293 76.5
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 8.1e-125 451.1 361 65.1
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.4e-124 450.3 360 67.2
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.4e-124 450.3 340 68.8
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.4e-124 449.5 310 73.2
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 3.1e-124 449.1 357 66.1
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 4.0e-124 448.7 358 64.8
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.9e-122 442.6 326 70.9
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 2.9e-122 442.6 368 64.4
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 4.9e-122 441.8 370 64.6
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 4.9e-122 441.8 369 63.7
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 4.9e-122 441.8 368 64.4
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 2.1e-120 436.4 363 63.6
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.5e-120 435.6 280 76.8
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 4.6e-120 435.3 369 62.6
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.8e-119 433.3 384 61.2
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 2.5e-118 429.5 367 63.5
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 3.3e-118 429.1 269 77.0
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 7.4e-118 427.9 290 73.4
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 9.6e-118 427.6 362 63.3
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.6e-118 427.6 352 63.6
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.6e-117 426.8 360 62.2
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 3.7e-117 425.6 333 69.1
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.7e-117 425.6 356 62.6
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 4.8e-117 425.2 353 63.7
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 8.1e-117 424.5 381 60.1
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.1e-116 424.1 357 64.4
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 3.1e-116 422.5 369 62.1
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 6.9e-116 421.4 357 63.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.9e-116 421.4 255 78.4
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.5e-115 420.2 282 73.4
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 2.0e-115 419.9 384 59.9
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 3.4e-115 419.1 360 60.6
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 5.8e-115 418.3 365 61.6
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 9.9e-115 417.5 350 62.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.3e-114 417.2 260 79.2
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.1e-113 414.1 356 61.8
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.4e-113 412.9 358 61.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 5.5e-113 411.8 351 62.7
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 5.5e-113 411.8 355 59.4
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.6e-112 410.2 264 73.9
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.6e-112 410.2 303 69.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 2.7e-112 409.5 354 62.4
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 3.5e-112 409.1 306 68.3
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.3e-111 407.1 337 62.6
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.8e-111 406.8 383 57.7
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 5.1e-111 405.2 359 61.3
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 6.7e-111 404.8 360 61.9
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.5e-110 403.7 245 78.4
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 4.3e-110 402.1 360 60.8
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 4.3e-110 402.1 295 69.8
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.1e-109 399.8 372 58.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 6.9e-108 394.8 361 58.7
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 9.0e-108 394.4 357 60.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.0e-107 393.3 366 57.7
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.6e-107 392.9 360 58.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 3.4e-107 392.5 361 58.2
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 4.9e-106 388.7 321 62.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 4.2e-105 385.6 375 56.3
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.2e-104 384.0 298 64.8
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.0e-103 380.9 296 65.2
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 7.4e-102 374.8 434 49.8
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 9.0e-100 367.9 271 66.1
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.9e-98 362.8 370 57.0
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.6e-96 357.1 266 68.0
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 5.5e-89 332.0 236 64.8
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.9e-83 312.0 253 64.0
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.6e-80 303.9 271 59.8
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 5.7e-78 295.4 225 64.0
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 7.7e-75 285.0 237 56.1
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.5e-73 280.8 273 57.9
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 9.4e-73 278.1 237 57.8
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.7e-72 275.8 239 53.1
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.0e-71 274.6 372 46.2
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 8.2e-69 265.0 272 55.1
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.4e-68 264.2 272 55.1
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 7.7e-67 258.5 198 65.7
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.4e-65 251.5 238 50.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 2.3e-63 246.9 240 49.6
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.2e-57 226.1 183 63.9
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 7.5e-54 215.3 169 64.5
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.3e-53 211.8 116 82.8
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.3e-49 199.5 120 82.5
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 3.6e-48 196.4 233 39.9
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 5.8e-46 189.1 203 45.3
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.7e-45 187.6 152 55.9
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 3.5e-43 179.9 206 53.9
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 3.5e-43 179.9 227 52.4
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.5e-41 174.5 219 43.4
FvH4_6g47571 Fragaria vesca HOM05D006539 ORTHO05D008694 5.6e-41 172.6 101 91.1
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.2e-30 138.3 149 55.0
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.7e-29 134.4 159 51.6
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.5e-25 120.6 75 80.0
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.8e-23 114.4 94 62.8
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 4.4e-22 109.8 125 56.0
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 8.7e-18 95.5 71 69.0
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 1.6e-16 91.3 212 29.7
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 6.4e-13 79.3 105 44.8
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 4.8e-08 63.2 133 29.3
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 6.2e-08 62.8 142 29.6
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 8.1e-08 62.4 230 24.3
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.1e-07 62.0 201 24.4
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.1e-07 62.0 153 32.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.4e-07 61.6 203 24.6
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 3.1e-07 60.5 201 23.9
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 3.1e-07 60.5 201 23.9
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 3.1e-07 60.5 201 23.9
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 3.1e-07 60.5 142 27.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 4.0e-07 60.1 142 27.5
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 5.3e-07 59.7 188 28.7
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 5.3e-07 59.7 142 28.2
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 6.9e-07 59.3 201 24.4
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 6.9e-07 59.3 173 24.9
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 6.9e-07 59.3 218 24.3
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 9.0e-07 58.9 201 22.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 9.0e-07 58.9 178 23.6
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.5e-06 58.2 150 26.0
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 1.5e-06 58.2 177 26.0
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.0e-06 57.8 152 26.3
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 2.0e-06 57.8 148 27.7
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 2.0e-06 57.8 142 27.5
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 2.6e-06 57.4 173 23.7
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 2.6e-06 57.4 196 24.0
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 2.6e-06 57.4 196 24.0
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 2.6e-06 57.4 151 31.1
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 4.5e-06 56.6 177 25.4
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 4.5e-06 56.6 142 26.8
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 4.5e-06 56.6 142 28.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 7.6e-06 55.8 146 27.4
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 9.9e-06 55.5 175 24.0


User provided reference genes

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