Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.4e-99 366.3 183 100.0
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 98.9
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 98.9
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 98.9
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.7e-98 360.9 183 98.4
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.4e-96 356.3 183 96.7
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 84.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.7
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 83.1
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 83.1
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 84.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 84.7
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 2.5e-85 318.9 182 84.6
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 82.5
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 83.1
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.6e-84 316.2 182 83.5
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.6
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 83.1
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 82.5
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 4.7e-84 314.7 182 83.0
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 80.3
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.1
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.1
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.5
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 83.1
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 80.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 83.1
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.8e-83 312.8 182 82.4
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.5
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.6
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 81.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 81.4
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.5
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 82.9
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 80.3
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.5
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 80.3
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.0
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 81.4
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 81.4
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.0e-82 309.3 181 82.9
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 81.4
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 81.4
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 82.0
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 81.4
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.9
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 80.3
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 80.3
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 80.3
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.3
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 77.6
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 77.6
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 79.8
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 79.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 79.2
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 78.7
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 81.2
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 77.0
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 78.7
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 78.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.2e-79 300.1 190 77.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 78.7
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 79.8
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 78.1
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 77.6
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 78.7
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 78.7
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 78.7
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 79.0
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.1
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 78.1
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 75.4
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 8.6e-78 293.9 181 76.8
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 8.6e-78 293.9 181 76.8
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.1e-77 293.5 182 76.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.9e-77 292.7 181 76.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 4.3e-77 291.6 182 79.7
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 75.1
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 75.1
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 75.7
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 76.8
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 76.8
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 76.8
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 76.8
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 76.8
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 7.3e-77 290.8 184 76.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 75.7
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 77.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.2e-76 290.0 183 77.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.2e-76 290.0 181 74.6
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 76.1
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.8e-76 288.9 181 76.2
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 75.5
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 76.1
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 73.8
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 8.9e-75 283.9 181 75.7
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 8.9e-75 283.9 181 75.7
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.8e-74 281.2 181 74.0
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 9.8e-74 280.4 183 74.3
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 2.2e-73 279.3 184 74.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 2.9e-73 278.9 183 73.2
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 73.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.2e-71 273.5 183 68.3
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.3e-70 270.0 155 81.9
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.7e-70 269.6 183 67.8
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.7e-70 269.6 182 70.3
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.7e-70 269.6 228 61.0
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.3e-70 269.2 183 67.2
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 3.3e-69 265.4 184 65.8
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 5.6e-69 264.6 219 61.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 7.3e-69 264.2 185 68.6
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.4e-67 260.0 183 72.7
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.0e-67 258.5 152 80.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.4e-66 255.4 154 79.9
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 7.5e-66 254.2 152 80.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 9.8e-66 253.8 181 64.6
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 7.0e-64 247.7 183 67.8
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 3.0e-62 242.3 181 69.1
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 6.8e-59 231.1 188 65.4
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 6.8e-59 231.1 181 63.5
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 9.9e-58 227.3 138 78.3
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.3e-57 226.9 183 63.9
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.1e-53 213.8 138 71.7
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.2e-52 210.3 183 61.2
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 5.2e-51 204.9 155 65.2
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.8e-50 201.4 179 60.3
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 6.4e-49 198.0 175 56.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.9e-48 196.4 152 60.5
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 2.4e-48 196.1 186 51.6
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 9.2e-48 194.1 158 59.5
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.3e-46 189.5 140 69.3
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 3.6e-44 182.2 102 86.3
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 6.2e-44 181.4 123 73.2
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 8.4e-41 171.0 100 80.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.9e-40 169.9 100 82.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.4e-40 169.5 158 54.4
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.4e-40 169.5 99 80.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.3e-36 157.1 132 55.3
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.1e-36 156.4 134 58.2
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 3.6e-36 155.6 106 67.0
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.0e-34 149.8 105 66.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 5.1e-30 135.2 81 80.2
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 4.3e-29 132.1 78 80.8
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 5.6e-29 131.7 99 60.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.4e-29 131.3 81 77.8
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.4e-26 122.5 101 58.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 9.3e-24 114.4 106 52.8
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 3.1e-19 99.4 68 61.8
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.3e-17 94.0 106 50.0
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.7e-17 93.6 52 86.5
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 6.7e-14 81.6 187 34.2
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-06 57.4 181 29.3
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 2.3e-06 56.6 81 42.0


User provided reference genes

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