Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.3e-187 659.4 317 100.0
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 3.5e-180 634.8 319 97.5
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 2.3e-179 632.1 319 97.2
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.8e-174 614.8 318 95.3
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.2e-173 611.7 318 95.3
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 3.9e-171 604.7 314 95.2
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 5.0e-126 454.9 321 70.4
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 8.6e-126 454.1 323 70.3
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 3.1e-123 445.7 323 69.0
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 2.7e-103 379.4 212 84.4
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 7.8e-103 377.9 332 61.1
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 3.0e-102 375.9 338 58.9
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 3.1e-99 365.9 327 61.5
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 5.2e-99 365.2 334 56.6
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 7.6e-98 361.3 328 59.5
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 7.8e-95 351.3 323 57.9
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 1.1e-91 340.9 329 56.5
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 3.1e-91 339.3 307 59.3
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 5.3e-91 338.6 333 55.0
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 6.9e-91 338.2 312 56.4
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 7.6e-90 334.7 329 55.6
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 7.6e-90 334.7 393 50.6
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 1.1e-88 330.9 307 55.4
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 1.2e-87 327.4 323 53.9
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 5.1e-86 322.0 281 58.4
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 1.1e-85 320.9 325 53.8
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 1.3e-84 317.4 308 54.2
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 1.2e-82 310.8 309 53.4
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 6.4e-81 305.1 308 53.9
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.1e-80 304.3 308 53.9
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 3.2e-80 302.8 308 53.9
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 6.7e-78 295.0 312 53.8
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 3.3e-77 292.7 304 53.3
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 4.8e-76 288.9 299 54.2
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 8.1e-76 288.1 307 50.8
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 8.1e-76 288.1 332 47.0
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 8.1e-76 288.1 327 48.9
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 1.1e-75 287.7 312 53.2
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 1.1e-75 287.7 312 54.5
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 3.4e-74 282.7 299 53.5
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 1.7e-73 280.4 304 52.3
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 5.5e-72 275.4 301 47.8
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 1.0e-70 271.2 308 49.0
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 1.1e-67 261.2 249 55.4
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.1e-67 259.6 325 45.2
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 1.0e-65 254.6 333 44.4
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 2.2e-65 253.4 304 45.4
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 2.9e-65 253.1 332 44.9
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 6.5e-65 251.9 332 44.3
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 5.5e-64 248.8 330 45.2
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 7.2e-64 248.4 321 43.6
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 1.2e-63 247.7 313 45.0
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.6e-63 247.3 326 42.3
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 3.0e-62 243.0 333 43.2
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 7.4e-61 238.4 284 47.9
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 9.7e-61 238.0 334 43.1
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 9.7e-61 238.0 286 47.6
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.1e-59 234.6 215 58.1
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 5.3e-59 232.3 332 41.9
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 1.3e-57 227.6 321 42.4
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 1.3e-57 227.6 321 42.4
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 2.2e-57 226.9 309 43.4
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 2.9e-57 226.5 321 43.0
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 2.9e-57 226.5 321 41.1
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 5.0e-57 225.7 321 43.0
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 6.5e-57 225.3 322 40.7
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 6.5e-57 225.3 321 41.1
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 4.2e-56 222.6 322 40.4
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 6.7e-54 215.3 297 44.8
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 4.8e-52 209.1 304 42.4
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 2.0e-50 203.8 321 40.8
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 7.9e-47 191.8 296 40.2
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 8.8e-46 188.3 315 37.8
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 2.0e-45 187.2 216 45.8
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 5.0e-41 172.6 149 61.1
VMungo0464G0255 Vigna mungo HOM05D003353 ORTHO05D003751 4.2e-40 169.5 169 55.6
SHI25555 Sapria himalayana HOM05D003353 ORTHO05D003751 5.5e-40 169.1 127 63.8
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 1.2e-37 161.4 303 36.0
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 2.0e-37 160.6 278 38.5
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 8.2e-36 155.2 270 37.0
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 1.8e-35 154.1 261 36.8
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 4.1e-35 152.9 301 33.2
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 5.3e-35 152.5 354 32.8
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 1.6e-34 151.0 151 51.7
Ca_04206_v3 Cicer arietinum L. HOM05D003353 ORTHO05D003751 2.7e-34 150.2 150 55.3
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 4.0e-30 136.3 156 46.8
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 5.7e-29 132.5 316 31.0
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 1.3e-28 131.3 207 40.1
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 2.8e-28 130.2 297 33.3
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 4.1e-27 126.3 316 30.4
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 3.5e-26 123.2 253 34.4
Lj7C591T5 Lonicera japonica HOM05D003353 ORTHO05D003751 8.6e-25 118.6 157 42.7
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 2.8e-23 113.6 243 31.7
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 3.6e-23 113.2 175 37.7
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 5.2e-22 109.4 318 31.1
Lalb_Chr02g0160031 Lupinus albus HOM05D003353 ORTHO05D003751 9.8e-21 105.1 116 52.6
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.7e-20 104.4 215 35.8
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 2.2e-20 104.0 127 48.0
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 2.2e-20 104.0 306 27.8
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.8e-19 100.9 193 35.2
Hma1.2p1_0802F.1_g220460 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 3.1e-19 100.1 140 42.1
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 4.1e-19 99.8 305 30.8
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 2.7e-18 97.1 175 34.3
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 2.7e-18 97.1 186 36.0
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 1.3e-17 94.7 246 29.3
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 1.7e-17 94.4 175 33.7
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.7e-17 94.4 252 28.6
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 2.3e-17 94.0 280 28.9
QL05p070069 Quercus lobata HOM05D003353 ORTHO05D003751 3.8e-17 93.2 152 44.1
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 3.3e-16 90.1 258 29.5
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.6e-15 87.8 231 32.0
Lalb_Chr14g0362801 Lupinus albus HOM05D003353 ORTHO05D003751 3.6e-15 86.7 177 35.6
Lalb_Chr14g0362821 Lupinus albus HOM05D003353 ORTHO05D003751 2.3e-14 84.0 155 37.4
Os02g0192300 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 4.4e-13 79.7 127 39.4
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 2.9e-12 77.0 143 35.7
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 4.9e-12 76.3 318 26.1
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 1.1e-11 75.1 110 37.3
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 1.4e-11 74.7 268 25.0
AagrBONN_evm.TU.Sc2ySwM_228.838 Anthoceros agrestis HOM05D003353 ORTHO05D003751 2.4e-11 73.9 265 24.9
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 3.2e-11 73.6 130 35.4
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 5.4e-11 72.8 133 37.6
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 2.7e-10 70.5 96 37.5
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 2.3e-09 67.4 59 44.1
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 6.6e-09 65.9 145 32.4
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 3.3e-08 63.5 142 33.1
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 1.6e-07 61.2 178 29.8
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 8.0e-07 58.9 172 30.2
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 5.2e-06 56.2 78 37.2
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 6.8e-06 55.8 60 43.3


User provided reference genes

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