Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.6e-195 685.3 355 100.0
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 5.2e-188 661.0 354 96.3
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 4.5e-176 621.3 331 97.6
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.7e-175 619.4 331 97.3
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 3.1e-156 555.4 340 87.1
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 3.3e-142 508.8 334 79.0
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.1e-116 424.1 311 71.4
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.1e-108 397.5 340 62.6
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 9.0e-108 394.4 341 61.9
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 5.9e-107 391.7 349 60.2
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 1.0e-106 391.0 348 61.5
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 1.0e-106 391.0 342 62.9
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 8.5e-106 387.9 349 62.5
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 8.5e-106 387.9 356 59.8
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 1.4e-105 387.1 338 63.0
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.9e-105 386.7 345 61.4
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 4.2e-105 385.6 362 58.6
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 4.2e-105 385.6 339 61.7
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 7.2e-105 384.8 350 60.9
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 1.0e-103 380.9 341 61.0
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.4e-103 380.6 349 61.3
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 3.9e-103 379.0 333 61.6
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 5.1e-103 378.6 331 61.6
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 6.7e-103 378.3 349 60.2
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 9.1e-100 367.9 345 59.1
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 5.9e-99 365.2 348 58.9
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 6.5e-98 361.7 349 57.6
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 5.5e-97 358.6 349 57.9
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 7.9e-96 354.8 336 56.0
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 3.9e-95 352.4 337 56.4
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 5.1e-95 352.1 342 55.8
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 8.8e-95 351.3 339 56.0
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 1.5e-94 350.5 343 56.0
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 4.4e-94 349.0 335 56.4
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 4.4e-94 349.0 342 56.4
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.3e-93 347.4 341 56.0
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 1.3e-93 347.4 341 54.8
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.7e-93 347.1 341 55.1
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 3.7e-93 345.9 326 59.2
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 4.8e-93 345.5 327 56.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.1e-92 344.4 338 55.6
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.4e-92 344.0 341 55.7
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.4e-92 344.0 341 55.4
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 1.4e-92 344.0 327 56.6
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.8e-92 343.6 341 55.1
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 4.1e-92 342.4 341 54.0
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 9.1e-92 341.3 339 55.8
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 2.0e-91 340.1 345 54.8
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 3.5e-91 339.3 340 55.6
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 5.9e-91 338.6 349 55.3
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.9e-90 336.3 346 54.0
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.5e-89 334.0 345 53.9
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 1.5e-89 334.0 338 55.6
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 9.4e-89 331.3 345 53.0
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 9.4e-89 331.3 345 52.5
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 9.4e-89 331.3 337 53.1
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.1e-88 330.1 346 54.0
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 2.7e-88 329.7 339 53.7
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 6.1e-88 328.6 341 54.3
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 1.4e-87 327.4 343 53.4
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 3.0e-87 326.2 332 54.5
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 5.2e-87 325.5 333 53.2
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 5.2e-87 325.5 345 53.3
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.1e-86 324.3 344 52.3
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 4.4e-86 322.4 298 58.4
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 9.7e-86 321.2 355 50.1
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 9.7e-86 321.2 333 52.3
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 2.2e-85 320.1 326 52.8
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 4.1e-84 315.8 333 52.6
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 1.2e-83 314.3 325 53.2
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.0e-82 311.2 336 52.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.3e-82 310.8 332 50.9
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 3.8e-82 309.3 384 48.4
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 3.8e-82 309.3 315 54.6
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 8.5e-82 308.1 294 56.8
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 3.6e-80 302.8 330 50.9
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 8.8e-79 298.1 342 51.2
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 1.5e-78 297.4 293 52.2
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 6.3e-77 292.0 385 47.8
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 9.1e-76 288.1 333 47.7
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 2.0e-75 287.0 323 50.2
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 4.5e-75 285.8 340 50.3
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 7.2e-73 278.5 330 46.7
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 9.8e-70 268.1 316 45.6
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 4.8e-69 265.8 337 47.5
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 1.1e-68 264.6 340 44.4
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 1.8e-68 263.8 279 50.2
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 9.5e-57 224.9 324 40.7
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 4.7e-56 222.6 238 47.9
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.5e-54 217.6 264 49.6
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 5.8e-54 215.7 345 44.1
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 2.7e-51 206.8 217 49.8
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 4.6e-51 206.1 203 51.7
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 5.0e-50 202.6 278 44.2
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 8.1e-48 195.3 289 39.8
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.2e-38 164.9 139 61.9
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 4.7e-32 142.9 280 33.6
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 4.9e-29 132.9 96 62.5
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.0e-26 125.2 144 54.9
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 1.3e-26 124.8 71 93.0
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.1e-23 115.2 131 55.7
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 5.3e-23 112.8 291 29.6
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 1.3e-21 108.2 136 47.8
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 3.9e-18 96.7 119 43.7
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-18 95.9 313 25.6
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.4e-12 77.4 66 65.2
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 3.5e-11 73.6 98 40.8
SMO164G0023 Selaginella moellendorffii HOM05D007241 ORTHO05D009142 2.6e-06 57.4 315 23.2


User provided reference genes

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