Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1032 Fragaria x ananassa HOM05D005016 ORTHO05D005740 2.4e-212 741.9 369 100.0
FvH4_6g06200 Fragaria vesca HOM05D005016 ORTHO05D005740 2.9e-149 532.3 380 76.6
RcHm_v2.0_Chr3g0455221 Rosa chinensis HOM05D005016 ORTHO05D005740 3.4e-142 508.8 375 73.1
FAN14G2756 Fragaria x ananassa HOM05D005016 ORTHO05D005740 1.2e-139 500.4 421 67.9
FAN02G4356 Fragaria x ananassa HOM05D005016 ORTHO05D005740 9.4e-124 447.6 380 67.6
Prupe.6G323600 Prunus persica HOM05D005016 ORTHO05D005740 6.7e-122 441.4 378 63.0
MD12G1217300 Malus domestica HOM05D005016 ORTHO05D005740 1.9e-116 423.3 373 63.3
CiPaw.07G019300 Carya illinoinensis HOM05D005016 ORTHO05D005740 2.5e-116 422.9 378 60.6
CANSAT54G1439 Cannabis sativa HOM05D005016 ORTHO05D005740 7.0e-111 404.8 372 57.8
CiPaw.08G163500 Carya illinoinensis HOM05D005016 ORTHO05D005740 9.1e-111 404.4 378 57.9
Sed0001919 Sechium edule HOM05D005016 ORTHO05D005740 7.7e-110 401.4 382 57.3
QL03p007603 Quercus lobata HOM05D005016 ORTHO05D005740 6.5e-109 398.3 378 57.1
FAN09G3795 Fragaria x ananassa HOM05D005016 ORTHO05D005740 2.5e-108 396.4 369 62.6
Thecc.05G310100 Theobroma cacao HOM05D005016 ORTHO05D005740 3.2e-108 396.0 372 57.5
QL03p007589 Quercus lobata HOM05D005016 ORTHO05D005740 4.7e-107 392.1 378 56.3
QL03p012886 Quercus lobata HOM05D005016 ORTHO05D005740 4.7e-107 392.1 378 56.3
Glyma.06G164600 Glycine max HOM05D005016 ORTHO05D005740 1.0e-106 391.0 386 56.5
Duzib177G0724 Durio zibethinus HOM05D005016 ORTHO05D005740 1.4e-106 390.6 374 56.4
Lj5g0018596 Lotus japonicus HOM05D005016 ORTHO05D005740 3.9e-106 389.0 378 56.3
TPR.G6101 Trifolium pratense HOM05D005016 ORTHO05D005740 5.2e-106 388.7 376 54.8
Gohir.A11G266100 Gossypium hirsutum HOM05D005016 ORTHO05D005740 4.4e-105 385.6 373 55.5
Gorai.007G298500 Gossypium raimondii HOM05D005016 ORTHO05D005740 7.4e-105 384.8 380 55.3
Gohir.D11G276400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.7e-104 382.5 373 55.2
Medtr1g083060 Medicago truncatula HOM05D005016 ORTHO05D005740 1.1e-103 380.9 375 54.4
Haze_04172 Corylus avellana HOM05D005016 ORTHO05D005740 1.4e-103 380.6 362 57.5
VMungo0720G0219 Vigna mungo HOM05D005016 ORTHO05D005740 3.1e-103 379.4 376 55.3
Ciclev10001764m.g Citrus clementina HOM05D005016 ORTHO05D005740 5.3e-103 378.6 377 54.6
MELO3C007526.2 Cucumis melo HOM05D005016 ORTHO05D005740 1.0e-101 374.4 376 55.3
CsaV3_6G042870 Cucumis sativus L. HOM05D005016 ORTHO05D005740 2.2e-101 373.2 376 55.1
TAR633G2288 Trochodendron aralioides HOM05D005016 ORTHO05D005740 6.5e-101 371.7 378 53.4
COL.COLO4_10485 Corchorus olitorius HOM05D005016 ORTHO05D005740 1.9e-100 370.2 342 56.1
Lalb_Chr02g0155631 Lupinus albus HOM05D005016 ORTHO05D005740 2.1e-99 366.7 376 52.9
GSVIVG01031086001 Vitis vinifera HOM05D005016 ORTHO05D005740 6.1e-99 365.2 381 54.1
Eucgr.B01853 Eucalyptus grandis HOM05D005016 ORTHO05D005740 2.3e-98 363.2 370 54.6
Eucgr.B01941 Eucalyptus grandis HOM05D005016 ORTHO05D005740 4.0e-98 362.5 370 54.3
Nn4g24543 Nelumbo nucifera HOM05D005016 ORTHO05D005740 1.5e-97 360.5 376 52.9
Ca_10118_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 4.4e-97 359.0 347 54.8
PGR102G1806 Punica granatum HOM05D005016 ORTHO05D005740 9.7e-97 357.8 374 53.5
Potri.005G027700 Populus trichocarpa HOM05D005016 ORTHO05D005740 1.8e-95 353.6 376 52.9
arahy.Tifrunner.gnm1.ann1.IT2BBU Arachis hypogaea HOM05D005016 ORTHO05D005740 7.0e-95 351.7 366 53.0
Cpa.g.sc28.137 Carica papaya HOM05D005016 ORTHO05D005740 1.5e-92 344.0 333 55.3
PSO541G5136 Papaver somniferum HOM05D005016 ORTHO05D005740 7.2e-92 341.7 374 51.1
Actinidia03321 Actinidia chinensis HOM05D005016 ORTHO05D005740 2.1e-91 340.1 376 51.6
arahy.Tifrunner.gnm1.ann1.16ZACY Arachis hypogaea HOM05D005016 ORTHO05D005740 3.6e-91 339.3 366 51.6
ClCG01G016560 Citrullus lanatus HOM05D005016 ORTHO05D005740 2.8e-88 329.7 373 51.7
PSO675G5142 Papaver somniferum HOM05D005016 ORTHO05D005740 7.0e-87 325.1 384 49.2
Ca_21251_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 4.5e-86 322.4 336 52.1
Cc02_g33260 Coffea canephora HOM05D005016 ORTHO05D005740 1.7e-85 320.5 374 49.5
Dinv09444 Davidia involucrata HOM05D005016 ORTHO05D005740 5.0e-85 318.9 381 49.9
Phvul.007G179300 Phaseolus vulgaris HOM05D005016 ORTHO05D005740 3.3e-84 316.2 321 53.9
THA.LOC104818706 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 3.3e-84 316.2 372 48.9
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 1.6e-83 313.9 378 46.8
Hund07082 Selenicereus undatus HOM05D005016 ORTHO05D005740 1.4e-82 310.8 376 47.9
MSTRG.6641 Avicennia marina HOM05D005016 ORTHO05D005740 1.8e-82 310.5 374 47.1
BcaC03g17793 Brassica carinata HOM05D001965 ORTHO05D005740 8.9e-82 308.1 373 46.9
Migut.M00036 Erythranthe guttata HOM05D005016 ORTHO05D005740 2.0e-81 307.0 374 47.9
C02p58190 Brassica napus HOM05D001965 ORTHO05D005740 4.4e-81 305.8 373 46.4
AUR62000803 Chenopodium quinoa HOM05D005016 ORTHO05D005740 7.5e-81 305.1 374 47.9
DCAR_002182 Daucus carota HOM05D005016 ORTHO05D005740 7.5e-81 305.1 372 48.1
ATR0053G060 Amborella trichopoda HOM05D005016 ORTHO05D005740 9.8e-81 304.7 382 46.6
Solyc04g072880.3 Solanum lycopersicum HOM05D005016 ORTHO05D005740 1.3e-80 304.3 376 47.6
MBI16_g23767_MAGBIO Magnolia biondii HOM05D005016 ORTHO05D005740 1.7e-80 303.9 418 45.2
Thhalv10004554m.g Eutrema salsugineum HOM05D005016 ORTHO05D005740 4.9e-80 302.4 372 47.0
AUR62005165 Chenopodium quinoa HOM05D005016 ORTHO05D005740 6.3e-80 302.0 374 47.6
Sopen04g029030 Solanum pennellii HOM05D005016 ORTHO05D005740 8.3e-80 301.6 376 47.3
PGSC0003DMG400009473 Solanum tuberosum HOM05D005016 ORTHO05D005740 3.2e-79 299.7 378 46.3
HPP92_024286 Vanilla planifolia HOM05D005016 ORTHO05D005740 5.4e-79 298.9 374 46.5
THA.LOC104821717 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 7.0e-79 298.5 380 47.1
A09p05360 Brassica napus HOM05D005016 ORTHO05D005740 9.2e-79 298.1 374 47.1
Hma1.2p1_0268F.1_g107630 Hydrangea macrophylla HOM05D005016 ORTHO05D005740 2.0e-78 297.0 373 46.6
Os03g0737600 Oryza sativa ssp. japonica HOM05D005016 ORTHO05D005740 2.0e-78 297.0 374 46.0
Sp2g20780 Schrenkiella parvula HOM05D005016 ORTHO05D005740 5.9e-78 295.4 382 46.3
Lsat_1_v5_gn_8_67801 Lactuca sativa HOM05D005016 ORTHO05D005740 7.8e-78 295.0 363 46.8
AL6G39410 Arabidopsis lyrata HOM05D005016 ORTHO05D005740 1.0e-77 294.7 380 45.8
CSS0032285 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 2.3e-77 293.5 383 46.7
vmacro04578 Vaccinium macrocarpon HOM05D005016 ORTHO05D005740 2.3e-77 293.5 405 44.4
BraA09t36174Z Brassica rapa HOM05D005016 ORTHO05D005740 2.9e-77 293.1 374 46.0
HPP92_024312 Vanilla planifolia HOM05D005016 ORTHO05D005740 3.9e-77 292.7 375 46.4
CSS0007157 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 6.6e-77 292.0 312 52.6
TWI18G0619 Tripterygium wilfordii HOM05D005016 ORTHO05D005740 8.6e-77 291.6 326 49.7
C09p05840 Brassica napus HOM05D005016 ORTHO05D005740 1.1e-76 291.2 374 46.3
BolC9t53511H Brassica oleracea HOM05D005016 ORTHO05D005740 1.1e-76 291.2 374 46.3
Zm00001eb056480 Zea mays HOM05D005016 ORTHO05D005740 1.5e-76 290.8 374 45.2
CARHR186150 Cardamine hirsuta HOM05D005016 ORTHO05D005740 2.5e-76 290.0 372 45.2
A02p38680 Brassica napus HOM05D001965 ORTHO05D005740 3.3e-76 289.7 383 45.2
AT5G27620 Arabidopsis thaliana HOM05D005016 ORTHO05D005740 4.3e-76 289.3 372 45.2
Carub.0006s2497 Capsella rubella HOM05D005016 ORTHO05D005740 4.3e-76 289.3 339 47.5
Sopen01g042860 Solanum pennellii HOM05D005016 ORTHO05D005740 3.6e-75 286.2 381 44.9
ECA236G0643 Erigeron canadensis HOM05D005016 ORTHO05D005740 6.1e-75 285.4 369 46.6
SGA_v2.0_scaffold73G24502 Striga asiatica HOM05D005016 ORTHO05D005740 6.1e-75 285.4 388 43.6
CAN.G1034.54 Capsicum annuum HOM05D005016 ORTHO05D005740 5.2e-74 282.3 378 44.7
Solyc01g099310.4 Solanum lycopersicum HOM05D005016 ORTHO05D005740 8.9e-74 281.6 381 44.4
Ah.04g160380 Amaranthus hybridus HOM05D005016 ORTHO05D005740 5.8e-73 278.9 373 44.8
PSO170G0092 Papaver somniferum HOM05D005016 ORTHO05D005740 7.5e-73 278.5 334 48.8
BraA02t08844Z Brassica rapa HOM05D001965 ORTHO05D005740 9.8e-73 278.1 371 44.2
Sabra05G0033200 Salix brachista HOM05D005016 ORTHO05D005740 1.6e-70 270.8 353 45.3
A06p37400 Brassica napus HOM05D001965 ORTHO05D002112 3.9e-69 266.2 365 45.2
BraA06t26664Z Brassica rapa HOM05D001965 ORTHO05D002112 3.9e-69 266.2 365 45.2
unitig_899.g15345 Utricularia gibba HOM05D005016 ORTHO05D005740 3.9e-69 266.2 372 42.2
EL10Ac4g09400 Beta vulgaris HOM05D005016 ORTHO05D005740 1.4e-66 257.7 374 43.6
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 3.1e-66 256.5 351 44.2
HanXRQChr12g0365431 Helianthus annuus HOM05D005016 ORTHO05D005740 7.5e-65 251.9 348 45.1
SalBow7G0803 Salvia bowleyana HOM05D005016 ORTHO05D005740 7.5e-65 251.9 379 41.4
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 2.2e-64 250.4 280 50.7
Pp3c5_10610 Physcomitrium patens HOM05D005016 ORTHO05D005740 3.7e-64 249.6 372 41.9
SMO367G1055 Selaginella moellendorffii HOM05D005016 ORTHO05D005740 3.7e-64 249.6 371 41.0
Mapoly0138s0006 Marchantia polymorpha HOM05D005016 ORTHO05D005740 4.9e-64 249.2 377 40.3
BolC7t44626H Brassica oleracea HOM05D005016 ORTHO05D005740 8.3e-64 248.4 375 42.4
Nitab4.5_0003830g0020 Nicotiana tabacum HOM05D005016 ORTHO05D005740 1.7e-61 240.7 342 43.6
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 2.3e-61 240.4 355 43.4
Nitab4.5_0002144g0050 Nicotiana tabacum HOM05D005016 ORTHO05D005740 2.3e-61 240.4 335 44.2
MD04G1203400 Malus domestica HOM05D005016 ORTHO05D005740 5.1e-61 239.2 328 47.6
Gohir.A04G121400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.9e-60 237.3 167 70.1
Gohir.A13G041900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.9e-60 237.3 167 70.1
Gohir.A13G117600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.9e-60 237.3 167 70.1
Gohir.D01G124500 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.9e-60 237.3 167 70.1
Gohir.D10G225900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.9e-60 237.3 167 70.1
Gohir.A10G082600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.3e-60 236.5 167 69.5
Gohir.A07G065300 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.6e-59 233.0 167 69.5
Glyma.17G201300 Glycine max HOM05D005016 ORTHO05D005740 6.2e-59 232.3 169 68.6
Sc09g0003080 Simmondsia chinensis HOM05D005016 ORTHO05D005740 8.1e-59 231.9 294 47.6
Manes.09G168600 Manihot esculenta HOM05D005016 ORTHO05D005740 8.9e-58 228.4 248 51.6
CDE10G0931 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 5.8e-57 225.7 270 50.7
PGSC0003DMG400024698 Solanum tuberosum HOM05D005016 ORTHO05D005740 4.6e-54 216.1 359 41.5
HanXRQChr12g0385591 Helianthus annuus HOM05D005016 ORTHO05D005740 2.3e-53 213.8 268 48.9
Pp3c27_2950 Physcomitrium patens HOM05D005016 ORTHO05D005740 5.1e-53 212.6 287 44.3
Gohir.D10G161900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 5.6e-52 209.1 156 66.7
Rhsim05G0222800 Rhododendron simsii HOM05D005016 ORTHO05D005740 5.6e-52 209.1 363 37.7
Oeu012104.3 Olea europaea HOM05D005016 ORTHO05D005740 2.1e-51 207.2 387 36.7
CBR_g29551 Chara braunii HOM05D005016 ORTHO05D005740 1.1e-47 194.9 405 34.3
Peaxi162Scf00235g00215 Petunia axillaris HOM05D005016 ORTHO05D005740 1.7e-45 187.6 295 42.0
Gohir.A01G127800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 9.0e-42 175.3 124 71.0
Prupe.2G191000 Prunus persica HOM05D005016 ORTHO05D005740 2.0e-41 174.1 131 68.7
Mapoly0001s0195 Marchantia polymorpha HOM05D005016 ORTHO05D005740 5.8e-41 172.6 303 38.0
Gohir.D09G110800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.2e-40 170.6 115 69.6
AagrBONN_evm.TU.Sc2ySwM_344.774 Anthoceros agrestis HOM05D005016 ORTHO05D005740 1.9e-39 167.5 290 39.7
BcaB04g19682 Brassica carinata HOM05D005016 ORTHO05D005740 5.4e-39 166.0 247 42.5
Psat0s2745g0160 Pisum sativum HOM05D005016 ORTHO05D005740 2.1e-38 164.1 117 66.7
Psat0s2745g0240 Pisum sativum HOM05D005016 ORTHO05D005740 6.6e-37 159.1 221 43.0
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.6e-35 153.3 132 58.3
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 4.8e-35 152.9 132 58.3
SEGI_03068 Sequoiadendron giganteum HOM05D005016 ORTHO05D005740 8.1e-27 125.6 119 52.9
BcaNung04542 Brassica carinata HOM05D001965 ORTHO05D002112 5.3e-26 122.9 114 56.1
Eucgr.H02201 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.9e-20 104.4 78 61.5
MCO06G045 Micromonas commoda HOM05D005016 ORTHO05D005740 5.7e-20 102.8 274 29.9
CDE10G0550 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 1.2e-17 95.1 120 45.0
PRCOL_00002163 Prasinoderma coloniale HOM05D005016 ORTHO05D005740 2.7e-14 84.0 208 33.7
CDE10G0345 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 4.6e-14 83.2 233 30.0
SHI00440 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-13 81.6 56 64.3
RcHm_v2.0_Chr7g0227161 Rosa chinensis HOM05D005016 ORTHO05D005740 6.7e-13 79.3 65 61.5
SHI00439 Sapria himalayana HOM05D005016 ORTHO05D005740 1.4e-10 71.6 57 66.7
MD04G1203500 Malus domestica HOM05D005016 ORTHO05D005740 1.9e-07 61.2 37 70.3
Cre14.g632783 Chlamydomonas reinhardtii HOM05D005016 ORTHO05D005740 3.6e-06 57.0 282 23.4
HanXRQChr16g0532711 Helianthus annuus HOM05D005016 ORTHO05D005740 3.6e-06 57.0 75 38.7


User provided reference genes

Program Settings