Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 2991.8 1498 100.0
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 2862.4 1504 96.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2660.9 1523 88.2
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2408.3 1505 81.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 2169.4 1513 72.6
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 2166.7 1520 72.9
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1963.7 1513 66.8
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1897.9 1520 63.9
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1875.9 1516 64.7
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1874.8 1560 63.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1857.4 1521 62.9
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1827.4 1522 62.1
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1789.2 1528 60.8
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1777.7 1513 61.1
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1777.7 1516 60.0
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1755.7 1515 60.7
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1751.1 1543 59.5
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1732.2 1543 59.8
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1723.4 1476 60.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1713.7 1515 59.3
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1709.5 1529 59.2
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1708.7 1611 56.9
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1706.8 1521 59.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1696.4 1516 59.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1680.6 1513 57.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1678.7 1516 58.8
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1672.1 1515 59.1
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1666.4 1513 58.3
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1664.4 1512 58.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1659.0 1512 58.3
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1656.7 1512 57.8
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1647.9 1200 69.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1634.8 1526 55.5
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1634.0 1531 56.6
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1634.0 1531 56.6
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1628.6 1515 57.5
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1622.1 1512 57.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1621.7 1525 55.6
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1618.6 1516 57.2
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1618.2 1515 57.1
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1610.5 1523 55.5
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1599.7 1521 54.9
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1594.3 1523 55.2
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1593.9 1453 57.7
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1589.7 1514 55.3
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1577.0 1536 54.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1573.9 1532 55.3
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1573.5 1510 55.8
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1571.2 1514 53.4
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1555.0 1515 53.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1554.3 1309 60.4
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1535.8 1509 54.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1528.8 1510 54.0
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1527.7 1517 54.2
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1525.4 1522 54.7
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1520.8 1522 54.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1515.4 1503 53.2
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1500.7 1514 53.2
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1495.3 1534 50.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1486.5 1121 69.6
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1473.4 1509 53.3
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1471.1 1538 51.3
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1447.2 1254 59.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1416.4 1463 51.7
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1411.0 1532 51.3
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1406.0 1531 51.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1403.3 1518 51.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1397.9 1563 50.2
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1394.4 1509 49.4
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1392.5 1528 51.1
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1381.3 1528 50.7
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1375.5 1527 50.2
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1368.6 1523 50.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1364.7 1525 49.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1364.0 1523 49.5
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1360.5 1527 49.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1357.4 1552 49.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1348.2 1764 43.9
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1346.3 1555 48.5
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1325.8 1525 49.1
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1322.8 1529 49.3
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1318.9 1516 47.2
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1311.2 1392 51.7
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1303.1 1154 58.7
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1275.0 1551 46.3
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1272.7 1071 61.7
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1254.6 1564 45.9
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1251.5 1101 58.9
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1247.3 1311 51.9
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1241.1 1132 56.7
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1187.6 1530 44.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1102.4 983 58.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.5e-260 903.3 1128 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.2e-241 841.3 1548 35.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-241 841.3 1164 42.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.1e-230 803.9 1029 45.3
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.0e-224 785.0 1541 34.1
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.4e-223 781.2 1544 35.1
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 3.7e-219 766.5 598 66.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.8e-213 747.7 987 43.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 6.3e-211 739.2 570 65.1
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.3e-208 731.5 599 62.4
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.3e-200 704.9 654 57.3
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.3e-200 704.1 561 62.9
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.8e-198 697.2 1035 42.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-197 694.9 1054 42.1
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 6.8e-197 692.6 1056 42.1
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.9e-193 679.5 618 58.4
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 7.8e-193 679.1 1418 33.5
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-173 614.4 481 67.8
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.7e-144 516.5 574 50.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.7e-126 457.6 1023 32.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.2e-123 448.4 561 44.2
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.8e-123 447.6 576 45.7
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.4e-117 429.1 213 97.7
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 9.4e-114 416.4 522 46.4
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.9e-107 394.8 505 44.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-107 394.8 412 55.8
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 5.9e-100 370.5 455 49.7
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-98 366.3 990 28.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.8e-96 356.7 322 55.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.1e-93 349.7 445 44.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 5.9e-92 344.0 303 58.4
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.3e-80 305.4 227 68.3
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.9e-78 297.7 552 35.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-76 292.4 387 43.4
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 8.6e-75 287.0 290 51.0
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.6e-71 275.4 373 41.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.9e-69 269.2 812 27.8
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 5.6e-66 257.7 284 48.9
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 7.3e-66 257.3 266 54.1
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 4.7e-65 254.6 284 51.4
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.9e-62 245.4 343 40.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.0e-59 236.9 471 33.8
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 6.8e-56 224.2 194 62.4
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 8.3e-54 217.2 182 62.1
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 8.3e-54 217.2 194 54.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 9.2e-53 213.8 209 55.0
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.2e-53 213.8 288 44.4
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.9e-51 208.4 239 50.6
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 6.4e-46 191.0 184 56.0
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.8e-44 184.1 130 66.2
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 8.1e-41 174.1 122 67.2
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.1e-40 173.7 180 53.9
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 3.4e-39 168.7 390 34.1
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.2e-38 166.0 129 63.6
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.4e-37 163.3 332 34.3
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 4.6e-36 158.3 146 54.1
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 9.6e-34 150.6 116 59.5
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 6.9e-32 144.4 116 59.5
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.9e-29 136.3 189 46.6
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 9.3e-29 134.0 101 69.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 7.9e-28 131.0 98 69.4
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 8.1e-25 120.9 116 56.0
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 3.5e-20 105.5 106 51.9
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-10 72.8 243 24.3
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 9.7e-10 70.9 62 53.2
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 6.3e-09 68.2 272 24.3
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 1.8e-08 66.6 61 52.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 2.0e-07 63.2 194 28.9
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 7.7e-07 61.2 72 50.0
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 2.2e-06 59.7 47 59.6
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.0e-06 58.5 38 71.1


User provided reference genes

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