Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.1e-88 327.4 160 100.0
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.5e-78 296.2 159 91.8
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 8.0e-72 273.9 151 90.1
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 7.0e-60 234.2 159 70.4
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 7.0e-60 234.2 159 71.7
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 7.0e-60 234.2 159 71.1
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 9.2e-60 233.8 159 72.3
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 1.2e-59 233.4 159 71.7
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.6e-59 233.0 159 69.8
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 1.6e-59 233.0 159 71.7
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.1e-59 232.6 159 71.7
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 2.1e-59 232.6 159 71.7
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 2.7e-59 232.3 159 69.8
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 3.5e-59 231.9 159 70.4
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 4.6e-59 231.5 159 71.7
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 6.0e-59 231.1 159 69.8
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 6.0e-59 231.1 159 70.4
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 7.8e-59 230.7 159 71.1
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 1.3e-58 229.9 159 70.4
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 1.3e-58 229.9 159 70.4
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.7e-58 229.6 159 69.8
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 1.7e-58 229.6 158 69.6
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 1.7e-58 229.6 159 71.1
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.7e-58 229.6 159 71.1
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 2.3e-58 229.2 159 70.4
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 2.3e-58 229.2 159 71.7
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 3.0e-58 228.8 159 69.8
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 3.9e-58 228.4 159 71.1
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 3.9e-58 228.4 159 68.6
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 5.1e-58 228.0 159 69.8
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 6.6e-58 227.6 159 67.9
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.6e-58 227.6 159 69.8
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 8.6e-58 227.3 159 69.8
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 1.1e-57 226.9 159 69.2
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.5e-57 226.5 159 69.2
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 1.5e-57 226.5 159 68.6
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.3e-57 225.3 159 69.2
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 5.6e-57 224.6 159 69.2
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.6e-56 223.0 159 67.9
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 2.1e-56 222.6 159 67.9
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 6.2e-56 221.1 159 67.9
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 6.2e-56 221.1 159 67.3
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 8.1e-56 220.7 159 67.9
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.1e-55 220.3 159 69.2
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 2.3e-55 219.2 164 66.5
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 2.3e-55 219.2 166 66.3
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 3.1e-55 218.8 159 66.0
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 3.1e-55 218.8 159 64.8
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 5.2e-55 218.0 159 67.3
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 5.2e-55 218.0 159 67.3
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 5.2e-55 218.0 159 67.3
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 6.8e-55 217.6 159 66.0
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 6.8e-55 217.6 159 66.7
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 8.9e-55 217.2 173 63.6
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.2e-54 216.9 159 65.4
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 1.5e-54 216.5 159 66.7
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 3.4e-54 215.3 160 65.6
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 5.8e-54 214.5 163 63.8
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 7.5e-54 214.2 159 65.4
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 2.2e-53 212.6 159 64.8
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 3.7e-53 211.8 159 62.9
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 6.4e-53 211.1 159 65.4
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 6.4e-53 211.1 159 64.8
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 6.4e-53 211.1 189 59.3
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 8.3e-53 210.7 159 64.2
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 4.1e-52 208.4 151 66.2
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 5.4e-52 208.0 159 64.2
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 5.4e-52 208.0 159 63.5
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 5.4e-52 208.0 159 60.4
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 9.2e-52 207.2 159 63.5
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 1.6e-51 206.5 159 65.4
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.6e-51 206.5 159 65.4
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.6e-51 206.5 159 63.5
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.6e-51 206.5 159 66.0
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.6e-51 206.5 159 61.6
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 2.1e-51 206.1 159 62.9
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 4.6e-51 204.9 159 64.8
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 4.6e-51 204.9 159 62.9
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 4.6e-51 204.9 159 65.4
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.8e-51 204.1 159 66.7
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.8e-51 204.1 159 66.7
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.8e-51 204.1 159 66.7
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.8e-51 204.1 159 66.7
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 7.8e-51 204.1 165 63.6
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 2.3e-50 202.6 159 62.9
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 3.0e-50 202.2 172 62.2
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 3.9e-50 201.8 159 59.1
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.5e-49 199.1 159 64.2
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 7.3e-49 197.6 159 57.2
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 2.1e-48 196.1 138 67.4
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 2.1e-48 196.1 159 64.8
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.8e-47 191.0 132 74.2
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.2e-45 186.0 159 61.6
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 4.9e-45 184.9 160 58.8
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 1.9e-44 183.0 159 53.5
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 1.9e-44 183.0 166 59.0
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 4.2e-44 181.8 155 54.8
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 7.1e-44 181.0 160 54.4
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 1.6e-43 179.9 135 64.4
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 2.1e-43 179.5 159 59.1
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 3.5e-43 178.7 159 58.5
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 4.6e-43 178.3 159 58.5
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 4.6e-43 178.3 159 58.5
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.0e-42 177.2 159 58.5
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 1.3e-42 176.8 134 64.9
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-35 153.7 159 52.2
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 7.8e-35 151.0 159 52.2
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 7.8e-35 151.0 159 52.2
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 1.0e-34 150.6 159 52.8
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 1.1e-33 147.1 159 50.9
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 1.5e-33 146.7 159 53.5
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-33 146.4 159 50.9
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 2.5e-33 146.0 159 49.7
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 2.1e-32 142.9 159 50.3
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.8e-32 142.5 172 47.1
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 3.6e-32 142.1 172 46.5
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 4.0e-31 138.7 175 46.3
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 9.0e-31 137.5 159 47.2
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 1.3e-29 133.7 159 46.5
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-29 133.7 118 60.2
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 4.9e-29 131.7 100 60.0
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.2e-27 127.1 159 45.3
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 1.2e-27 127.1 85 71.8
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.8e-26 123.2 85 69.4
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.3e-26 122.9 159 44.7
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 3.4e-22 109.0 85 61.2
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 2.9e-21 105.9 61 82.0
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 1.1e-20 104.0 75 66.7
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 7.9e-19 97.8 144 39.6
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 1.0e-18 97.4 81 51.9
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 8.7e-18 94.4 165 35.2
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 7.4e-17 91.3 130 43.1
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 7.4e-09 64.7 166 27.1
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 3.7e-08 62.4 174 27.6


User provided reference genes

Program Settings