Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1931 Fragaria x ananassa HOM05D006586 ORTHO05D008254 0.0e+00 1112.1 522 100.0
FvH4_5g05750 Fragaria vesca HOM05D006586 ORTHO05D008254 4.0e-237 824.7 487 82.5
RcHm_v2.0_Chr7g0193061 Rosa chinensis HOM05D006586 ORTHO05D008254 3.9e-232 808.1 505 77.6
FAN18G2086 Fragaria x ananassa HOM05D006586 ORTHO05D008254 3.3e-231 805.1 505 78.4
FAN13G1600 Fragaria x ananassa HOM05D006586 ORTHO05D008254 3.9e-224 781.6 568 70.8
Prupe.5G169900 Prunus persica HOM05D006586 ORTHO05D008254 1.7e-208 729.6 503 70.4
MD14G1175900 Malus domestica HOM05D006586 ORTHO05D008254 1.5e-199 699.9 503 67.0
Cfa019173 Carpinus fangiana HOM05D006586 ORTHO05D008254 5.0e-171 605.1 503 58.6
QL10p008791 Quercus lobata HOM05D006586 ORTHO05D008254 6.5e-171 604.7 507 59.2
Haze_07550 Corylus avellana HOM05D006586 ORTHO05D008254 8.5e-171 604.4 503 59.0
Potri.015G080400 Populus trichocarpa HOM05D006586 ORTHO05D008254 1.0e-163 580.9 508 56.1
Ciclev10019926m.g Citrus clementina HOM05D006586 ORTHO05D008254 2.2e-163 579.7 501 56.7
Thecc.03G024500 Theobroma cacao HOM05D006586 ORTHO05D008254 2.2e-163 579.7 507 57.0
CiPaw.11G023000 Carya illinoinensis HOM05D006586 ORTHO05D008254 6.5e-163 578.2 502 56.4
COL.COLO4_30118 Corchorus olitorius HOM05D006586 ORTHO05D008254 4.2e-162 575.5 506 56.7
Manes.14G062950 Manihot esculenta HOM05D006586 ORTHO05D008254 7.2e-162 574.7 503 56.7
TAR371G0860 Trochodendron aralioides HOM05D006586 ORTHO05D008254 6.1e-161 571.6 512 55.5
Atru.chr9.2534_Atru.chr9.2535 Acer truncatum HOM05D006586 ORTHO05D008254 3.0e-160 569.3 505 55.6
Lj9C445T6 Lonicera japonica HOM05D006586 ORTHO05D008254 1.3e-158 563.9 516 54.5
GSVIVG01007692001 Vitis vinifera HOM05D006586 ORTHO05D008254 2.2e-158 563.1 505 55.0
Actinidia19342 Actinidia chinensis HOM05D006586 ORTHO05D008254 2.4e-157 559.7 502 55.4
Duzib205G0761 Durio zibethinus HOM05D006586 ORTHO05D008254 2.2e-155 553.1 500 55.8
Gorai.008G293900 Gossypium raimondii HOM05D006586 ORTHO05D008254 2.2e-155 553.1 507 55.4
Gohir.A12G272800 Gossypium hirsutum HOM05D006586 ORTHO05D008254 2.1e-153 546.6 512 54.9
ClCG06G017160 Citrullus lanatus HOM05D006586 ORTHO05D008254 3.9e-152 542.3 514 54.1
Nitab4.5_0001284g0040 Nicotiana tabacum HOM05D006586 ORTHO05D008254 3.9e-152 542.3 506 53.6
Phvul.009G175900 Phaseolus vulgaris HOM05D006586 ORTHO05D008254 4.4e-151 538.9 518 51.4
Eucgr.B00243 Eucalyptus grandis HOM05D006586 ORTHO05D008254 7.4e-151 538.1 504 53.6
Sopen03g031690 Solanum pennellii HOM05D006586 ORTHO05D008254 2.8e-150 536.2 501 53.9
Nitab4.5_0006452g0010 Nicotiana tabacum HOM05D006586 ORTHO05D008254 3.7e-150 535.8 508 53.5
CsaV3_1G001320 Cucumis sativus L. HOM05D006586 ORTHO05D008254 4.1e-149 532.3 505 53.7
Nn4g22672 Nelumbo nucifera HOM05D006586 ORTHO05D008254 5.3e-149 531.9 505 52.3
Solyc03g112600.4 Solanum lycopersicum HOM05D006586 ORTHO05D008254 1.2e-148 530.8 501 53.1
Medtr3g077420 Medicago truncatula HOM05D006586 ORTHO05D008254 2.0e-148 530.0 520 52.1
PGR083G0458 Punica granatum HOM05D006586 ORTHO05D008254 2.0e-148 530.0 502 53.0
Lsat_1_v5_gn_4_75921 Lactuca sativa HOM05D006586 ORTHO05D008254 4.5e-148 528.9 500 52.0
Gohir.D12G273500 Gossypium hirsutum HOM05D006586 ORTHO05D008254 7.7e-148 528.1 508 53.9
arahy.Tifrunner.gnm1.ann1.Y9SFAP Arachis hypogaea HOM05D006586 ORTHO05D008254 3.8e-147 525.8 508 53.0
VMungo1309G1735 Vigna mungo HOM05D006586 ORTHO05D008254 6.5e-147 525.0 510 51.4
arahy.Tifrunner.gnm1.ann1.BDIM58 Arachis hypogaea HOM05D006586 ORTHO05D008254 8.5e-147 524.6 508 53.0
MELO3C026280.2 Cucumis melo HOM05D006586 ORTHO05D008254 1.5e-146 523.9 504 53.4
Rhsim08G0174900 Rhododendron simsii HOM05D006586 ORTHO05D008254 1.9e-146 523.5 502 52.0
CAN.G1166.29 Capsicum annuum HOM05D006586 ORTHO05D008254 3.2e-146 522.7 500 52.8
Sc10g0010150 Simmondsia chinensis HOM05D006586 ORTHO05D008254 5.5e-146 521.9 495 52.5
Lj1g0001085 Lotus japonicus HOM05D006586 ORTHO05D008254 7.2e-146 521.5 519 50.3
Cc04_g12530 Coffea canephora HOM05D006586 ORTHO05D008254 9.4e-146 521.2 497 51.3
TPR.G28722 Trifolium pratense HOM05D006586 ORTHO05D008254 2.7e-145 519.6 507 52.1
Aqoxy3G02831 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 8.0e-145 518.1 501 51.3
Oeu036011.1 Olea europaea HOM05D006586 ORTHO05D008254 1.8e-144 516.9 508 50.6
PSO832G2003 Papaver somniferum HOM05D006586 ORTHO05D008254 2.6e-143 513.1 522 51.0
Migut.O00130 Erythranthe guttata HOM05D006586 ORTHO05D008254 4.4e-143 512.3 500 49.8
MSTRG.23151 Avicennia marina HOM05D006586 ORTHO05D008254 7.5e-143 511.5 500 50.6
PSO063G4773 Papaver somniferum HOM05D006586 ORTHO05D008254 7.5e-143 511.5 506 51.8
DCAR_016036 Daucus carota HOM05D006586 ORTHO05D008254 4.8e-142 508.8 504 51.2
Sed0000603 Sechium edule HOM05D006586 ORTHO05D008254 1.6e-140 503.8 481 54.1
HanXRQChr11g0348321 Helianthus annuus HOM05D006586 ORTHO05D008254 1.3e-139 500.7 500 49.6
Ah.02g110650 Amaranthus hybridus HOM05D006586 ORTHO05D008254 1.1e-138 497.7 535 47.9
AUR62008177 Chenopodium quinoa HOM05D006586 ORTHO05D008254 1.9e-138 496.9 503 50.5
EL10Ac5g10701 Beta vulgaris HOM05D006586 ORTHO05D008254 5.5e-138 495.4 524 48.1
Hund09455 Selenicereus undatus HOM05D006586 ORTHO05D008254 4.7e-137 492.3 508 48.8
AT5G63080 Arabidopsis thaliana HOM05D006586 ORTHO05D008254 1.0e-136 491.1 498 50.0
SGA_v2.0_scaffold25G10812 Striga asiatica HOM05D006586 ORTHO05D008254 1.4e-136 490.7 502 49.0
AUR62028758 Chenopodium quinoa HOM05D006586 ORTHO05D008254 1.8e-136 490.3 508 49.4
CSS0037952 Camellia sinensis var. sinensis HOM05D006586 ORTHO05D008254 5.2e-136 488.8 377 64.2
Sp2g26210 Schrenkiella parvula HOM05D006586 ORTHO05D008254 8.8e-136 488.0 501 49.5
SalBow5G1744 Salvia bowleyana HOM05D006586 ORTHO05D008254 1.2e-135 487.6 502 49.2
Carub.0008s2381 Capsella rubella HOM05D006586 ORTHO05D008254 9.8e-135 484.6 506 48.8
SalBow5G1232 Salvia bowleyana HOM05D006586 ORTHO05D008254 2.2e-134 483.4 502 49.0
AL8G40110 Arabidopsis lyrata HOM05D006586 ORTHO05D008254 1.1e-133 481.1 502 48.0
Thhalv10004134m.g Eutrema salsugineum HOM05D006586 ORTHO05D008254 2.0e-132 476.9 498 49.2
BolC9t53826H Brassica oleracea HOM05D006586 ORTHO05D008254 1.1e-130 471.1 508 47.8
ATR1152G085 Amborella trichopoda HOM05D006586 ORTHO05D008254 2.5e-130 469.9 464 50.2
BcaC04g23364 Brassica carinata HOM05D006586 ORTHO05D008254 4.7e-129 465.7 508 47.4
THA.LOC104821484 Tarenaya hassleriana HOM05D006586 ORTHO05D008254 6.1e-129 465.3 499 47.1
BcaB04g19943 Brassica carinata HOM05D006586 ORTHO05D008254 6.8e-128 461.8 511 47.6
A09p08080 Brassica napus HOM05D006586 ORTHO05D008254 8.9e-128 461.5 498 47.0
BraA09t36459Z Brassica rapa HOM05D006586 ORTHO05D008254 8.9e-128 461.5 498 47.0
C09p09140 Brassica napus HOM05D006586 ORTHO05D008254 1.7e-126 457.2 533 45.6
PGSC0003DMG400018168 Solanum tuberosum HOM05D006586 ORTHO05D008254 2.4e-125 453.4 361 61.2
unitig_22.g6289 Utricularia gibba HOM05D006586 ORTHO05D008254 2.7e-124 449.9 501 47.7
vmacro19416 Vaccinium macrocarpon HOM05D006586 ORTHO05D008254 8.6e-123 444.9 692 37.7
Zm00001eb342240 Zea mays HOM05D006586 ORTHO05D008254 5.8e-119 432.2 524 45.6
Ca_16153_v3 Cicer arietinum L. HOM05D006586 ORTHO05D008254 5.4e-117 425.6 446 49.8
Peaxi162Scf00089g01633 Petunia axillaris HOM05D006586 ORTHO05D008254 5.4e-117 425.6 348 59.2
FAN08G2490 Fragaria x ananassa HOM05D006586 ORTHO05D008254 3.3e-114 416.4 257 77.8
SEGI_41391 Sequoiadendron giganteum HOM05D006586 ORTHO05D008254 5.6e-114 415.6 442 49.5
ECA232G2495 Erigeron canadensis HOM05D006586 ORTHO05D000001 6.2e-105 385.6 424 47.2
Aqoxy1G03747 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 3.1e-104 383.3 445 45.8
SHI17138 Sapria himalayana HOM05D006586 ORTHO05D008254 1.2e-103 381.3 501 41.9
MBI16_g14603_MAGBIO Magnolia biondii HOM05D006586 ORTHO05D008254 2.1e-100 370.5 526 40.5
Os01g0546900 Oryza sativa ssp. japonica HOM05D006586 ORTHO05D008254 2.4e-96 357.1 444 44.6
Dinv20624 Davidia involucrata HOM05D006586 ORTHO05D008254 3.4e-95 353.2 248 66.1
Psat5g115280 Pisum sativum HOM05D006586 ORTHO05D008254 7.6e-95 352.1 327 54.7
Mapoly0108s0029 Marchantia polymorpha HOM05D006586 ORTHO05D008254 7.3e-90 335.5 385 45.5
CDE04G2890 Ceratophyllum demersum HOM05D006586 ORTHO05D008254 2.1e-89 334.0 455 41.5
SMO141G0010 Selaginella moellendorffii HOM05D006586 ORTHO05D008254 3.4e-87 326.6 358 48.6
Glyma.04G185900 Glycine max HOM05D006586 ORTHO05D008254 5.6e-82 309.3 308 51.9
HPP92_023397 Vanilla planifolia HOM05D006586 ORTHO05D008254 7.4e-74 282.3 419 37.9
MBI16_g23863_MAGBIO Magnolia biondii HOM05D006586 ORTHO05D008254 2.3e-67 260.8 377 40.6
AagrBONN_evm.TU.Sc2ySwM_344.3069 Anthoceros agrestis HOM05D006586 ORTHO05D008254 1.6e-65 254.6 312 45.5
arahy.Tifrunner.gnm1.ann1.1D5X8L Arachis hypogaea HOM05D006586 ORTHO05D008254 4.8e-65 253.1 427 37.9
Sabra15G0104600 Salix brachista HOM05D006586 ORTHO05D008254 6.2e-65 252.7 285 46.3
CBR_g49886 Chara braunii HOM05D006586 ORTHO05D008254 1.1e-61 241.9 558 28.9
Lalb_Chr11g0070371 Lupinus albus HOM05D006586 ORTHO05D008254 1.4e-61 241.5 185 61.6
Dinv20623 Davidia involucrata HOM05D006586 ORTHO05D008254 6.1e-60 236.1 146 71.2
Cpa.g.sc153.11 Carica papaya HOM05D006586 ORTHO05D008254 7.9e-60 235.7 247 46.6
Aa31LG11G590 Aethionema arabicum HOM05D006586 ORTHO05D008254 1.3e-57 228.4 177 58.8
CARHR276890 Cardamine hirsuta HOM05D006586 ORTHO05D008254 3.8e-54 216.9 223 47.5
Lalb_Chr11g0070381 Lupinus albus HOM05D006586 ORTHO05D008254 1.5e-50 204.9 107 83.2
Sabra15G0072500 Salix brachista HOM05D006586 ORTHO05D008254 2.0e-50 204.5 127 72.4
Aa31LG11G600 Aethionema arabicum HOM05D006586 ORTHO05D008254 7.2e-45 186.0 196 46.4
CANSAT64G0258 Cannabis sativa HOM05D006586 ORTHO05D008254 3.6e-44 183.7 128 67.2
MCO16G527 Micromonas commoda HOM05D006586 ORTHO05D008254 3.8e-38 163.7 372 30.1
arahy.Tifrunner.gnm1.ann1.DN8DE7 Arachis hypogaea HOM05D006586 ORTHO05D008254 2.0e-34 151.4 125 61.6
PRCOL_00001780 Prasinoderma coloniale HOM05D006586 ORTHO05D008254 8.0e-28 129.4 361 27.4
Cpa.g.sc153.15 Carica papaya HOM05D006586 ORTHO05D008254 5.4e-24 116.7 71 70.4
Cre03.g177007 Chlamydomonas reinhardtii HOM05D006586 ORTHO05D008254 4.2e-21 107.1 504 21.2
Glyma.06G180200 Glycine max HOM05D006586 ORTHO05D008254 4.1e-16 90.5 45 82.2
Cpa.g.sc153.14 Carica papaya HOM05D006586 ORTHO05D008254 2.1e-12 78.2 70 51.4
Haze_26852 Corylus avellana HOM05D002457 ORTHO05D008732 2.0e-10 71.6 326 23.3
Cc06_g06990 Coffea canephora HOM05D002457 ORTHO05D008732 2.6e-10 71.2 316 24.1
CANSAT64G0706 Cannabis sativa HOM05D002457 ORTHO05D008732 2.9e-09 67.8 347 22.8
CiPaw.11G082000 Carya illinoinensis HOM05D002457 ORTHO05D008732 2.9e-09 67.8 322 23.3
MSTRG.26594 Avicennia marina HOM05D002457 ORTHO05D008732 4.9e-09 67.0 321 24.6
HanXRQChr13g0398791 Helianthus annuus HOM05D002457 ORTHO05D008732 4.9e-09 67.0 316 22.8
Sabra16G0066900 Salix brachista HOM05D002457 ORTHO05D008732 4.9e-09 67.0 342 23.4
Migut.L01840 Erythranthe guttata HOM05D002457 ORTHO05D008732 6.3e-09 66.6 318 21.4
Thhalv10013290m.g Eutrema salsugineum HOM05D002457 ORTHO05D008732 6.3e-09 66.6 335 23.3
THA.LOC104799263 Tarenaya hassleriana HOM05D002457 ORTHO05D008732 6.3e-09 66.6 339 23.3
Glyma.19G202600 Glycine max HOM05D002457 ORTHO05D008732 8.3e-09 66.2 320 24.1
Nitab4.5_0000721g0010 Nicotiana tabacum HOM05D002457 ORTHO05D008732 8.3e-09 66.2 316 22.8
Ca_09083_v3 Cicer arietinum L. HOM05D002457 ORTHO05D008732 1.4e-08 65.5 322 22.7
MBI05_g40563_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D008732 1.4e-08 65.5 339 23.3
BcaNung06692 Brassica carinata HOM05D002457 ORTHO05D008732 1.8e-08 65.1 335 22.7
C09p70220 Brassica napus HOM05D002457 ORTHO05D008732 1.8e-08 65.1 335 22.7
BolC9t59766H Brassica oleracea HOM05D002457 ORTHO05D008732 1.8e-08 65.1 335 22.7
CsaV3_2G029800 Cucumis sativus L. HOM05D002457 ORTHO05D005750 1.8e-08 65.1 332 21.1
Peaxi162Scf00203g00029 Petunia axillaris HOM05D002457 ORTHO05D008732 1.8e-08 65.1 318 23.6
PGR004G0672 Punica granatum HOM05D002457 ORTHO05D008732 1.8e-08 65.1 320 21.9
SGA_v2.0_scaffold184G40036 Striga asiatica HOM05D002457 ORTHO05D008732 1.8e-08 65.1 316 22.8
Lj1g0003374 Lotus japonicus HOM05D002457 ORTHO05D008732 2.4e-08 64.7 322 23.0
VMungo0331G0446 Vigna mungo HOM05D002457 ORTHO05D008732 2.4e-08 64.7 321 23.1
Lsat_1_v5_gn_2_121640 Lactuca sativa HOM05D002457 ORTHO05D008732 3.2e-08 64.3 316 21.8
Nitab4.5_0012842g0010 Nicotiana tabacum HOM05D002457 ORTHO05D008732 3.2e-08 64.3 316 22.5
PSO339G5312 Papaver somniferum HOM05D002457 ORTHO05D008732 7.0e-08 63.2 335 23.0
AT5G06550 Arabidopsis thaliana HOM05D002457 ORTHO05D008732 9.2e-08 62.8 336 22.0
DCAR_020678 Daucus carota HOM05D002457 ORTHO05D008732 9.2e-08 62.8 329 22.2
ECA233G1363 Erigeron canadensis HOM05D002457 ORTHO05D008732 9.2e-08 62.8 318 22.6
Phvul.001G198700 Phaseolus vulgaris HOM05D002457 ORTHO05D008732 9.2e-08 62.8 322 23.0
Dinv11900 Davidia involucrata HOM05D002457 ORTHO05D008732 1.2e-07 62.4 315 23.2
QL07p026269 Quercus lobata HOM05D002457 ORTHO05D008732 1.2e-07 62.4 322 22.0
TPR.G34450 Trifolium pratense HOM05D002457 ORTHO05D008732 1.2e-07 62.4 322 23.0
Oeu054770.1 Olea europaea HOM05D002457 ORTHO05D005750 1.6e-07 62.0 335 22.4
Prupe.7G089800 Prunus persica HOM05D002457 ORTHO05D008732 1.6e-07 62.0 322 22.7
CAN.G128.166 Capsicum annuum HOM05D002457 ORTHO05D008732 2.0e-07 61.6 318 21.7
PSO384G3383 Papaver somniferum HOM05D002457 ORTHO05D008732 2.0e-07 61.6 335 23.0
Cre09.g400441 Chlamydomonas reinhardtii HOM05D002457 ORTHO05D005750 2.7e-07 61.2 325 23.1
Lj1C1061G4 Lonicera japonica HOM05D002457 ORTHO05D008732 2.7e-07 61.2 329 23.1
TAR369G1073 Trochodendron aralioides HOM05D002457 ORTHO05D008732 2.7e-07 61.2 339 23.6
arahy.Tifrunner.gnm1.ann1.3292NE Arachis hypogaea HOM05D002457 ORTHO05D008732 3.5e-07 60.8 322 22.4
arahy.Tifrunner.gnm1.ann1.V1YZ1K Arachis hypogaea HOM05D002457 ORTHO05D008732 3.5e-07 60.8 322 22.4
MD12G1046300 Malus domestica HOM05D002457 ORTHO05D008732 3.5e-07 60.8 322 21.7
Psat3g026960 Pisum sativum HOM05D002457 ORTHO05D008732 3.5e-07 60.8 322 22.4
Rhsim05G0230700 Rhododendron simsii HOM05D002457 ORTHO05D008732 5.9e-07 60.1 321 23.4
Gorai.009G234900 Gossypium raimondii HOM05D002457 ORTHO05D005750 7.8e-07 59.7 332 22.0
MD14G1089700 Malus domestica HOM05D006586 ORTHO05D008254 2.3e-06 58.2 26 96.2
HPP92_011039 Vanilla planifolia HOM05D002457 ORTHO05D008732 2.3e-06 58.2 67 43.3
SalBow8G1618 Salvia bowleyana HOM05D002457 ORTHO05D005750 2.9e-06 57.8 326 21.8
CDE03G0287 Ceratophyllum demersum HOM05D002457 ORTHO05D005750 3.9e-06 57.4 136 28.7
MCO09G347 Micromonas commoda HOM05D002457 ORTHO05D008732 5.0e-06 57.0 334 22.2
SGA_v2.0_scaffold28G11909 Striga asiatica HOM05D002457 ORTHO05D005750 6.6e-06 56.6 95 31.6


User provided reference genes

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