Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0824 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.0e-47 191.0 94 100.0
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 1.6e-35 152.5 112 75.0
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.9e-33 145.6 109 74.3
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 7.9e-27 123.6 127 59.1
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 1.4e-20 102.8 56 87.5
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 3.3e-17 91.7 58 81.0
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 4.3e-17 91.3 74 67.6
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 4.3e-17 91.3 55 85.5
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 9.7e-17 90.1 55 83.6
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 9.7e-17 90.1 55 83.6
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 9.7e-17 90.1 55 83.6
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 9.7e-17 90.1 55 83.6
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 9.7e-17 90.1 55 83.6
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 9.7e-17 90.1 55 83.6
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 1.6e-16 89.4 55 81.8
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 1.6e-16 89.4 55 81.8
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 1.6e-16 89.4 55 81.8
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 1.6e-16 89.4 55 81.8
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 2.2e-16 89.0 70 67.1
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.2e-16 89.0 55 80.0
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.2e-16 89.0 55 81.8
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 2.8e-16 88.6 55 80.0
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 2.8e-16 88.6 55 81.8
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 2.8e-16 88.6 55 81.8
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 2.8e-16 88.6 56 80.4
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 2.8e-16 88.6 55 81.8
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 2.8e-16 88.6 55 81.8
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 2.8e-16 88.6 55 81.8
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 81.8
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 81.8
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 81.8
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 3.7e-16 88.2 55 80.0
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 4.8e-16 87.8 55 80.0
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 4.8e-16 87.8 55 80.0
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 80.0
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 80.0
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 78.2
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 80.0
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 80.0
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 81.8
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 6.3e-16 87.4 55 81.8
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 8.2e-16 87.0 55 80.0
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 8.2e-16 87.0 55 80.0
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 8.2e-16 87.0 55 85.5
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 8.2e-16 87.0 55 80.0
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 8.2e-16 87.0 55 80.0
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.1e-15 86.7 55 78.2
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.1e-15 86.7 55 78.2
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 1.1e-15 86.7 55 78.2
Rhsim09G0110300 Rhododendron simsii HOM05D003188 ORTHO05D003602 1.1e-15 86.7 55 78.2
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 1.1e-15 86.7 55 78.2
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 1.4e-15 86.3 62 74.2
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.4e-15 86.3 55 80.0
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 1.4e-15 86.3 55 80.0
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 83.6
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 83.6
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 78.2
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 80.0
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 80.0
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 76.4
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 76.4
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 83.6
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 78.2
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 76.4
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 1.8e-15 85.9 55 76.4
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 2.4e-15 85.5 55 80.0
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 3.1e-15 85.1 55 83.6
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 3.1e-15 85.1 55 78.2
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 3.1e-15 85.1 55 76.4
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.1e-15 85.1 55 76.4
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 3.1e-15 85.1 55 76.4
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 3.1e-15 85.1 55 80.0
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 4.1e-15 84.7 55 76.4
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 5.3e-15 84.3 55 78.2
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 6.9e-15 84.0 55 76.4
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 6.9e-15 84.0 55 76.4
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 6.9e-15 84.0 56 75.0
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.9e-15 84.0 56 75.0
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.9e-15 84.0 56 75.0
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.9e-15 84.0 56 75.0
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 9.0e-15 83.6 55 78.2
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 9.0e-15 83.6 55 81.8
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 9.0e-15 83.6 55 81.8
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.2e-14 83.2 55 76.4
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 1.2e-14 83.2 55 74.5
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 1.2e-14 83.2 55 76.4
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.5e-14 82.8 58 74.1
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 1.5e-14 82.8 55 74.5
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.0e-14 82.4 56 73.2
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 2.0e-14 82.4 55 74.5
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 2.6e-14 82.0 55 74.5
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 2.6e-14 82.0 55 74.5
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 3.4e-14 81.6 55 74.5
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 4.5e-14 81.3 55 72.7
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 4.5e-14 81.3 55 76.4
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 4.5e-14 81.3 58 70.7
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 5.9e-14 80.9 55 76.4
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 5.9e-14 80.9 55 76.4
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 5.9e-14 80.9 55 76.4
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 5.9e-14 80.9 55 74.5
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 5.9e-14 80.9 55 74.5
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 7.7e-14 80.5 55 72.7
SalBow1G5101 Salvia bowleyana HOM05D003188 ORTHO05D003602 7.7e-14 80.5 55 72.7
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.0e-13 80.1 66 65.2
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 1.0e-13 80.1 55 78.2
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.0e-13 80.1 55 72.7
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 1.3e-13 79.7 55 74.5
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.3e-13 79.7 55 70.9
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.3e-13 79.7 55 76.4
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 1.7e-13 79.3 55 74.5
SHI18942 Sapria himalayana HOM05D003188 ORTHO05D003602 1.7e-13 79.3 55 72.7
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 2.2e-13 79.0 55 74.5
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.9e-13 78.6 73 61.6
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 2.9e-13 78.6 55 72.7
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.8e-13 78.2 55 72.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 3.8e-13 78.2 55 72.7
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 3.8e-13 78.2 55 72.7
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 3.8e-13 78.2 55 72.7
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 3.8e-13 78.2 55 70.9
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 5.0e-13 77.8 58 67.2
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 6.5e-13 77.4 55 69.1
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 6.5e-13 77.4 55 69.1
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 6.5e-13 77.4 55 70.9
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 4.2e-12 74.7 55 67.3
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 5.5e-12 74.3 59 64.4
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 9.4e-12 73.6 55 67.3
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.6e-11 72.8 55 70.9
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 1.6e-11 72.8 55 69.1
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 2.1e-11 72.4 56 71.4
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 2.1e-11 72.4 58 60.3
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 2.1e-11 72.4 58 60.3
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 2.7e-11 72.0 55 61.8
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 2.7e-11 72.0 59 62.7
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 3.6e-11 71.6 55 60.0
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 4.6e-11 71.2 88 51.1
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 4.6e-11 71.2 64 56.2
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 6.1e-11 70.9 58 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 7.9e-11 70.5 58 58.6
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 1.0e-10 70.1 55 67.3
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.4e-10 69.7 55 60.0
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 2.3e-10 68.9 58 58.6
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 3.9e-10 68.2 66 59.1
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 8.8e-10 67.0 55 58.2
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 2.0e-09 65.9 43 79.1
FAN11G0282 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.0e-09 65.9 43 79.1
FAN12G3292 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.0e-09 65.9 43 79.1
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 2.5e-09 65.5 55 58.2
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 3.3e-09 65.1 90 46.7
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 4.3e-09 64.7 55 63.6
Os11g0137500 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 5.7e-09 64.3 55 56.4
GSVIVG01012261001 Vitis vinifera HOM05D003188 ORTHO05D003602 1.1e-07 60.1 42 73.8
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 5.3e-07 57.8 55 58.2
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 5.3e-07 57.8 41 73.2
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 9.1e-07 57.0 57 54.4
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 9.1e-07 57.0 57 54.4
Nn4g23712 Nelumbo nucifera HOM05D003188 ORTHO05D003602 1.2e-06 56.6 43 67.4
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 4.5e-06 54.7 67 50.7


User provided reference genes

Program Settings