Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0408 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.7e-34 148.7 69 100.0
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 3.1e-28 127.9 86 73.3
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 4.0e-28 127.5 86 72.1
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.0e-28 127.5 86 72.1
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.0e-28 127.5 86 72.1
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.0e-28 127.5 86 72.1
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.0e-28 127.5 86 72.1
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 4.0e-28 127.5 86 72.1
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 1.2e-27 125.9 86 70.9
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 1.2e-27 125.9 86 70.9
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 1.5e-27 125.6 86 70.9
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 2.6e-27 124.8 66 86.4
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 2.6e-27 124.8 86 70.9
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 5.8e-27 123.6 86 69.8
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 7.6e-27 123.2 86 69.8
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 1.3e-26 122.5 86 68.6
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 1.7e-26 122.1 86 69.8
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 2.2e-26 121.7 66 83.3
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 2.2e-26 121.7 86 67.4
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 2.9e-26 121.3 86 68.6
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 2.9e-26 121.3 86 68.6
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 2.9e-26 121.3 86 68.6
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 2.9e-26 121.3 86 68.6
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 2.9e-26 121.3 86 68.6
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 2.9e-26 121.3 86 68.6
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 3.8e-26 120.9 86 67.4
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 3.8e-26 120.9 86 67.4
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 4.9e-26 120.6 86 67.4
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 4.9e-26 120.6 86 66.3
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 4.9e-26 120.6 86 67.4
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 4.9e-26 120.6 86 67.4
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 4.9e-26 120.6 86 67.4
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 6.4e-26 120.2 86 67.4
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 6.4e-26 120.2 86 67.4
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 6.4e-26 120.2 86 68.6
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 8.4e-26 119.8 86 67.4
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 8.4e-26 119.8 86 67.4
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 8.4e-26 119.8 86 67.4
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 8.4e-26 119.8 86 67.4
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 1.4e-25 119.0 86 65.1
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 1.4e-25 119.0 86 65.1
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 1.4e-25 119.0 86 68.6
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 1.4e-25 119.0 86 67.4
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 1.9e-25 118.6 86 66.3
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 1.9e-25 118.6 86 67.4
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.9e-25 118.6 86 66.3
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 1.9e-25 118.6 86 66.3
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 2.4e-25 118.2 86 66.3
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 2.4e-25 118.2 86 67.4
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 2.4e-25 118.2 86 67.4
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 2.4e-25 118.2 86 66.3
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 3.2e-25 117.9 86 66.3
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 3.2e-25 117.9 86 64.0
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 3.2e-25 117.9 86 65.1
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 3.2e-25 117.9 86 67.4
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 3.2e-25 117.9 86 64.0
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 4.1e-25 117.5 86 66.3
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 4.1e-25 117.5 86 66.3
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 7.1e-25 116.7 86 64.0
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 9.2e-25 116.3 86 65.1
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 9.2e-25 116.3 86 64.0
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 1.2e-24 115.9 86 64.0
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 1.2e-24 115.9 86 66.3
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 1.2e-24 115.9 86 65.1
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.6e-24 115.5 86 65.1
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 1.6e-24 115.5 86 64.0
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 2.1e-24 115.2 86 65.1
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 2.1e-24 115.2 86 65.1
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 2.1e-24 115.2 86 65.1
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 2.7e-24 114.8 86 65.1
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.7e-24 114.8 86 65.1
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 2.7e-24 114.8 86 65.1
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 3.5e-24 114.4 86 64.0
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 4.6e-24 114.0 86 65.1
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 4.6e-24 114.0 86 64.0
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 4.6e-24 114.0 86 62.8
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 6.0e-24 113.6 86 62.8
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 7.8e-24 113.2 86 64.0
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 7.8e-24 113.2 86 64.0
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 7.8e-24 113.2 86 64.0
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 7.8e-24 113.2 86 64.0
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 1.0e-23 112.8 86 64.0
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 1.0e-23 112.8 86 64.0
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.0e-23 112.8 86 62.8
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.3e-23 112.5 86 61.6
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.3e-23 112.5 86 61.6
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 1.3e-23 112.5 86 64.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.3e-23 112.5 86 64.0
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 1.3e-23 112.5 86 64.0
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 1.7e-23 112.1 86 66.3
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.7e-23 112.1 86 64.0
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 1.7e-23 112.1 86 62.8
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 2.3e-23 111.7 86 61.6
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 3.0e-23 111.3 86 62.8
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 3.0e-23 111.3 86 62.8
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 3.0e-23 111.3 86 62.8
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 3.9e-23 110.9 86 62.8
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 3.9e-23 110.9 86 62.8
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 3.9e-23 110.9 86 62.8
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 5.1e-23 110.5 92 59.8
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 5.1e-23 110.5 92 59.8
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 6.6e-23 110.2 90 60.0
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 6.6e-23 110.2 90 60.0
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 6.6e-23 110.2 86 60.5
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 6.6e-23 110.2 86 61.6
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 8.6e-23 109.8 86 60.5
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 1.1e-22 109.4 86 62.8
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 1.1e-22 109.4 86 62.8
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 1.5e-22 109.0 86 59.3
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 1.5e-22 109.0 86 61.6
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 1.5e-22 109.0 86 59.3
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 2.5e-22 108.2 86 61.6
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 3.3e-22 107.8 94 59.6
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 3.3e-22 107.8 86 60.5
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 3.3e-22 107.8 86 60.5
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 5.6e-22 107.1 86 60.5
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 7.3e-22 106.7 86 60.5
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.2e-21 105.9 85 61.2
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 1.2e-21 105.9 106 51.9
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 1.6e-21 105.5 86 55.8
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 2.1e-21 105.1 85 61.2
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 2.8e-21 104.8 86 55.8
RcHm_v2.0_Chr7g0219221 Rosa chinensis HOM05D003334 ORTHO05D004076 3.6e-21 104.4 83 62.7
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 4.7e-21 104.0 86 58.1
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 8.1e-21 103.2 86 57.0
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 1.1e-20 102.8 86 57.0
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 1.4e-20 102.4 86 52.3
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 2.4e-20 101.7 85 54.1
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 4.4e-19 97.4 89 52.8
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 1.7e-18 95.5 85 56.5
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 2.2e-18 95.1 86 53.5
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-17 92.8 85 55.3
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 1.1e-17 92.8 86 46.5
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 1.1e-17 92.8 85 51.8
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.4e-17 92.4 86 50.0
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 2.1e-16 88.6 49 79.6
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 2.7e-16 88.2 85 54.1
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 2.7e-16 88.2 86 51.2
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 4.6e-16 87.4 72 56.9
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 1.0e-15 86.3 85 51.8
Oeu028438.1 Olea europaea HOM05D003334 ORTHO05D004076 1.7e-15 85.5 49 73.5
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.3e-15 85.1 43 83.7
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 6.6e-15 83.6 86 51.2
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 6.6e-15 83.6 86 51.2
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 8.7e-15 83.2 86 51.2
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 8.7e-15 83.2 86 51.2
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.1e-14 82.8 96 45.8
FAN09G0153 Fragaria x ananassa HOM05D003334 ORTHO05D004076 2.5e-14 81.6 67 64.2
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 3.6e-13 77.8 87 43.7
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.8e-13 77.4 68 55.9
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 6.2e-13 77.0 87 44.8
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 1.1e-12 76.3 62 53.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.4e-12 75.1 87 47.1
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 9.0e-12 73.2 87 46.0
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 2.0e-11 72.0 87 44.8
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 2.0e-11 72.0 66 56.1
Peaxi162Scf00020g00242 Petunia axillaris HOM05D003334 ORTHO05D004076 3.4e-11 71.2 67 52.2
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.4e-09 65.1 88 44.3
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 2.4e-09 65.1 61 54.1
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 6.7e-07 57.0 87 33.3


User provided reference genes

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