Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 6.3e-195 684.1 391 100.0
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 3.1e-194 681.8 391 95.4
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 3.1e-194 681.8 391 95.4
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 3.1e-194 681.8 391 95.4
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.1e-191 673.3 391 99.0
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.3e-184 649.8 375 92.5
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.5e-183 645.6 375 90.7
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 1.2e-177 626.7 394 89.1
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 4.0e-165 585.1 394 76.1
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 3.7e-163 578.6 393 76.1
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 5.8e-156 554.7 396 72.0
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 9.8e-156 553.9 396 71.7
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 4.9e-155 551.6 394 73.6
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.6e-153 546.6 394 71.3
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 2.7e-153 545.8 394 71.6
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 4.6e-153 545.0 414 71.5
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 2.3e-152 542.7 411 71.0
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 3.9e-152 542.0 393 70.2
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 1.1e-151 540.4 395 71.6
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.5e-151 540.0 396 69.4
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 1.5e-151 540.0 396 69.4
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 2.5e-151 539.3 393 70.7
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.3e-151 538.5 412 67.7
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 5.6e-151 538.1 413 68.3
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 5.6e-151 538.1 396 69.2
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 1.2e-150 537.0 396 69.7
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 1.2e-150 537.0 396 69.9
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 1.6e-150 536.6 398 69.8
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 2.3e-149 532.7 396 71.5
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 2.3e-149 532.7 407 69.5
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 2.3e-149 532.7 395 69.4
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 3.1e-149 532.3 401 72.1
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 4.0e-149 531.9 398 71.6
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 4.0e-149 531.9 399 71.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 5.2e-149 531.6 400 69.5
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 8.9e-149 530.8 396 73.2
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 1.2e-148 530.4 392 75.3
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 1.2e-148 530.4 392 75.3
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.5e-148 530.0 391 73.7
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 3.4e-148 528.9 402 67.7
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 3.4e-148 528.9 377 73.2
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 3.4e-148 528.9 400 69.0
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 3.4e-148 528.9 392 75.3
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 5.8e-148 528.1 397 73.3
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 9.8e-148 527.3 401 68.1
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 1.3e-147 526.9 400 70.0
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.2e-147 526.2 396 70.5
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 2.2e-147 526.2 391 69.8
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 2.2e-147 526.2 400 69.2
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 6.4e-147 524.6 415 65.8
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 6.4e-147 524.6 397 75.6
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 8.3e-147 524.2 398 74.9
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.1e-146 523.9 403 68.2
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 1.4e-146 523.5 399 74.4
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 1.4e-146 523.5 399 74.4
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 1.4e-146 523.5 417 67.4
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 4.1e-146 521.9 393 70.7
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 4.1e-146 521.9 409 72.6
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 1.2e-145 520.4 399 75.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 1.2e-145 520.4 399 75.7
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 1.2e-145 520.4 392 70.9
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 2.1e-145 519.6 394 71.6
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 2.7e-145 519.2 399 66.7
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 3.5e-145 518.8 398 75.4
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 4.6e-145 518.5 392 70.9
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 6.0e-145 518.1 395 75.4
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 7.8e-145 517.7 399 71.2
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 1.3e-144 516.9 392 68.4
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.3e-144 516.9 403 68.0
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 3.0e-144 515.8 395 72.4
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 3.0e-144 515.8 399 75.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 6.6e-144 514.6 389 66.1
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 8.6e-144 514.2 402 65.9
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 8.6e-144 514.2 398 69.6
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 1.1e-143 513.8 400 76.8
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 1.1e-143 513.8 399 70.2
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 1.5e-143 513.5 406 70.0
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.5e-143 513.5 393 71.8
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 2.5e-143 512.7 393 70.5
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 3.3e-143 512.3 410 65.1
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 4.3e-143 511.9 396 68.9
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 5.6e-143 511.5 393 71.5
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 1.2e-142 510.4 402 65.9
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.2e-142 510.4 400 68.5
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 2.1e-142 509.6 396 70.2
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 2.8e-142 509.2 399 69.2
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 2.8e-142 509.2 401 70.1
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 8.1e-142 507.7 400 73.0
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 1.1e-141 507.3 400 74.2
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 1.8e-141 506.5 402 68.9
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 1.8e-141 506.5 397 70.0
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 1.8e-141 506.5 399 69.2
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 5.2e-141 505.0 400 73.5
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 5.2e-141 505.0 397 69.5
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 8.9e-141 504.2 399 69.9
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 4.4e-140 501.9 400 74.0
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 5.8e-140 501.5 404 68.3
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 6.4e-139 498.0 400 68.8
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 8.4e-139 497.7 398 72.6
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 1.1e-138 497.3 400 68.5
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 2.4e-138 496.1 399 65.2
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 3.2e-138 495.7 410 64.6
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 9.2e-138 494.2 399 67.4
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 2.1e-137 493.0 396 72.5
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 2.1e-137 493.0 396 72.5
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 3.5e-137 492.3 394 73.4
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 3.5e-137 492.3 394 73.4
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 4.6e-137 491.9 391 67.5
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 6.0e-137 491.5 403 68.2
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 3.9e-136 488.8 392 64.8
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 4.3e-135 485.3 370 67.8
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 5.6e-135 485.0 399 63.9
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 2.1e-134 483.0 375 69.6
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 5.2e-133 478.4 397 66.8
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 3.4e-132 475.7 369 69.9
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 6.4e-131 471.5 340 72.6
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 4.2e-130 468.8 389 66.3
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 2.1e-129 466.5 397 64.0
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 1.3e-128 463.8 412 63.1
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 3.1e-125 452.6 407 58.0
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 5.3e-125 451.8 423 59.6
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 6.9e-125 451.4 391 61.4
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 6.4e-123 444.9 409 57.2
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 8.4e-123 444.5 365 65.5
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 3.3e-119 432.6 377 61.3
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 5.3e-117 425.2 407 54.1
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 6.9e-117 424.9 428 53.7
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.1e-114 417.5 392 54.8
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 3.2e-114 416.0 422 57.3
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.5e-113 412.5 416 57.5
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.3e-112 409.8 390 53.8
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.7e-110 402.5 341 62.8
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 9.0e-109 397.9 377 57.6
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 5.8e-108 395.2 342 61.7
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.0e-104 384.4 373 57.9
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 2.8e-102 376.3 329 64.7
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 6.3e-102 375.2 288 70.8
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 5.9e-100 368.6 392 53.3
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 2.1e-97 360.1 238 76.5
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 1.5e-95 354.0 293 70.6
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 3.4e-92 342.8 233 73.0
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.5e-92 342.4 392 50.8
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 3.8e-91 339.3 397 47.9
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 5.5e-90 335.5 237 72.2
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 7.9e-89 331.6 394 49.5
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 1.1e-87 327.8 393 46.6
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 8.2e-86 321.6 182 84.1
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 1.2e-84 317.8 236 68.6
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 2.7e-81 306.6 218 68.8
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 5.7e-79 298.9 436 47.0
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 6.3e-78 295.4 342 51.5
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 4.5e-76 289.3 165 83.0
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.5e-71 274.2 402 39.3
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 1.5e-71 274.2 319 52.0
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 7.2e-66 255.4 390 38.2
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 8.0e-65 251.9 147 78.2
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 4.9e-54 216.1 198 70.7
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 6.3e-54 215.7 245 59.2
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.9e-51 206.8 214 56.5
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 1.1e-50 204.9 193 67.4
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 4.3e-50 203.0 195 60.0
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 5.7e-47 192.6 124 85.5
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 2.2e-46 190.7 370 36.8
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 7.8e-44 182.2 236 50.4
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 3.6e-41 173.3 124 67.7
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.5e-39 167.9 124 68.5
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 4.4e-39 166.4 105 78.1
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 5.8e-39 166.0 179 42.5
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.0e-35 155.2 125 66.4
Dinv02280 Davidia involucrata HOM05D003624 ORTHO05D004188 9.5e-34 148.7 73 89.0
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 8.1e-33 145.6 104 67.3
CARHR218920 Cardamine hirsuta HOM05D003624 ORTHO05D004188 7.5e-31 139.0 81 75.3
RcHm_v2.0_Chr2g0124991 Rosa chinensis HOM05D003624 ORTHO05D004188 2.2e-30 137.5 67 91.0
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 2.4e-29 134.0 105 65.7
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 1.0e-27 128.6 81 82.7
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 5.2e-24 116.3 78 71.8
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-23 114.8 70 75.7
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-23 114.8 70 75.7
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 4.4e-23 113.2 74 73.0
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 1.0e-19 102.1 71 70.4
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 6.2e-17 92.8 68 63.2
DCAR_004680 Daucus carota HOM05D003624 ORTHO05D004188 3.4e-15 87.0 55 72.7
arahy.Tifrunner.gnm1.ann1.T8I7QW Arachis hypogaea HOM05D003624 ORTHO05D004188 2.2e-14 84.3 97 48.5
TAR625G1177 Trochodendron aralioides HOM05D003624 ORTHO05D004188 4.9e-14 83.2 84 52.4
Ca_06299_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 9.3e-13 79.0 141 53.9
MCO11G622 Micromonas commoda HOM05D003624 ORTHO05D004188 1.3e-06 58.5 119 26.9


User provided reference genes

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