Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.6e-86 320.9 157 100.0
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.0e-66 256.9 157 84.1
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-66 256.9 157 84.1
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-66 256.9 157 84.1
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-66 256.9 157 84.1
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.0e-66 256.9 157 84.1
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.2e-66 255.8 157 83.4
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.1e-65 253.4 157 83.4
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 3.3e-62 241.9 157 78.3
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 4.3e-62 241.5 155 80.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.8e-61 238.8 153 79.1
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.8e-61 238.8 154 79.2
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 2.8e-61 238.8 152 80.3
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 3.7e-61 238.4 152 80.3
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 6.3e-61 237.7 154 78.6
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 8.2e-61 237.3 154 78.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 8.2e-61 237.3 154 78.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.1e-60 236.9 154 77.9
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.1e-60 236.9 159 76.7
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 2.4e-60 235.7 156 77.6
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 3.1e-60 235.3 154 77.3
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 4.1e-60 235.0 155 77.4
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 5.3e-60 234.6 154 77.3
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 6.9e-60 234.2 157 75.8
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 6.9e-60 234.2 156 76.9
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 6.9e-60 234.2 155 77.4
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 6.9e-60 234.2 155 77.4
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 9.0e-60 233.8 155 76.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 9.0e-60 233.8 155 76.8
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.6e-59 232.3 154 76.6
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 2.6e-59 232.3 155 76.1
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 2.6e-59 232.3 152 77.0
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.0e-58 230.3 156 75.6
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.7e-58 229.6 156 76.3
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.9e-58 228.8 154 75.3
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.9e-58 228.8 154 75.3
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.9e-58 228.8 154 74.7
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.5e-58 227.6 152 76.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 8.5e-58 227.3 155 76.1
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.1e-57 226.9 151 76.8
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.4e-57 226.5 154 74.7
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.9e-57 226.1 152 75.7
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.5e-57 225.7 152 75.0
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 3.2e-57 225.3 154 73.4
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.2e-57 225.3 154 74.0
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.2e-57 225.3 156 75.0
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.2e-57 225.3 156 75.0
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 4.2e-57 224.9 156 73.7
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 4.2e-57 224.9 153 74.5
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 5.5e-57 224.6 157 73.9
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 5.5e-57 224.6 152 75.7
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 9.3e-57 223.8 152 75.0
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.2e-56 223.4 156 73.7
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-56 223.4 155 74.8
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.2e-56 223.4 150 74.7
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.6e-56 223.0 157 72.0
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.1e-56 222.6 154 74.0
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 2.1e-56 222.6 157 73.2
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.1e-56 222.6 155 73.5
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 3.6e-56 221.9 154 73.4
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.6e-56 221.9 154 74.0
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 3.6e-56 221.9 156 73.7
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.6e-56 221.5 154 73.4
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 7.9e-56 220.7 156 73.7
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 7.9e-56 220.7 152 74.3
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.0e-55 220.3 156 73.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.3e-55 219.9 155 73.5
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.3e-55 219.9 156 73.1
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.0e-55 218.8 156 72.4
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 3.0e-55 218.8 155 72.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 8.7e-55 217.2 152 72.4
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 8.7e-55 217.2 152 72.4
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 8.7e-55 217.2 152 72.4
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.9e-54 216.1 152 71.7
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.9e-54 216.1 152 73.7
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.3e-54 215.3 157 73.9
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 5.7e-54 214.5 155 70.3
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 5.7e-54 214.5 155 70.3
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 5.7e-54 214.5 156 71.2
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 5.7e-54 214.5 156 71.8
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 5.7e-54 214.5 156 71.2
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 7.4e-54 214.2 156 71.2
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 9.7e-54 213.8 154 71.4
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 9.7e-54 213.8 149 72.5
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.3e-53 213.4 155 69.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.3e-53 213.4 155 69.7
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.3e-53 213.4 155 69.7
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.2e-53 212.6 152 72.4
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 2.2e-53 212.6 157 70.1
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 3.7e-53 211.8 152 72.4
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 6.3e-53 211.1 155 69.0
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 8.2e-53 210.7 152 73.0
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 4.1e-52 208.4 152 71.1
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 4.1e-52 208.4 148 71.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 4.1e-52 208.4 151 68.9
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.3e-50 203.4 152 69.1
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.3e-50 203.4 154 67.5
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 5.0e-50 201.4 188 60.1
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.4e-49 199.9 188 59.6
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.9e-49 199.5 156 66.7
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 5.5e-49 198.0 207 54.6
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.3e-47 192.6 152 64.5
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.0e-46 189.5 149 67.1
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 5.7e-46 188.0 150 63.3
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.7e-45 186.4 155 67.1
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 8.2e-45 184.1 219 49.3
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.2e-45 184.1 156 59.6
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 2.4e-44 182.6 153 66.0
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.1e-41 173.7 153 54.2
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.4e-41 173.3 145 58.6
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.5e-41 172.6 124 69.4
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.2e-40 170.2 150 61.3
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.6e-40 168.7 155 52.3
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.8e-39 166.4 157 55.4
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 4.4e-38 161.8 154 53.2
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.7e-38 161.4 152 61.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.7e-37 159.8 79 93.7
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.1e-36 157.1 144 56.9
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 2.4e-36 156.0 157 57.3
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-35 153.3 100 73.0
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.5e-34 147.9 79 86.1
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 8.5e-34 147.5 114 70.2
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-33 146.4 118 65.3
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 2.5e-33 146.0 111 70.3
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.0e-32 141.0 110 68.2
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.2e-31 138.3 111 66.7
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.0e-30 136.3 69 88.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.4e-30 135.2 73 84.9
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 4.4e-30 135.2 111 64.9
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-28 130.2 113 61.9
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-28 129.8 112 62.5
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-28 129.4 111 63.1
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-28 129.4 66 87.9
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 4.1e-28 128.6 112 61.6
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 4.1e-28 128.6 112 61.6
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.7e-27 125.9 78 80.8
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-26 123.6 126 58.7
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.9e-25 119.8 106 63.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 8.3e-21 104.4 90 57.8
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.5e-18 94.7 113 47.8
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 3.6e-16 89.0 44 86.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 4.7e-16 88.6 44 88.6
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.0e-15 87.4 112 48.2
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.8e-14 80.9 103 43.7
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.0e-10 70.9 81 54.3
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 5.0e-10 68.6 41 75.6
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.6e-08 63.5 39 79.5
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.6e-08 63.5 48 64.6


User provided reference genes

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