Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.8e-190 667.2 334 100.0
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.4e-187 659.4 334 98.8
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 3.0e-185 651.7 334 98.2
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.7e-180 634.8 378 86.8
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.3e-177 626.3 334 91.9
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 4.8e-159 564.7 334 83.5
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 4.5e-149 531.6 333 79.9
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.5e-146 521.9 334 79.0
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 7.9e-146 520.8 335 78.2
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.8e-145 519.6 334 78.7
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 5.1e-145 518.1 334 78.4
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 1.7e-140 503.1 331 74.6
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.4e-139 500.0 333 74.5
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 9.3e-139 497.3 355 71.8
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 6.7e-137 491.1 331 72.8
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.5e-136 490.0 333 73.3
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.9e-136 489.6 328 73.5
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.8e-135 485.7 333 74.8
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.8e-135 485.0 299 84.6
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.8e-134 483.0 328 73.8
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.2e-133 480.3 335 70.1
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.5e-133 479.9 333 73.6
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.0e-133 479.6 332 71.7
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 2.6e-133 479.2 334 73.4
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.8e-133 478.0 331 72.5
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.9e-132 475.7 334 72.2
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 3.8e-132 475.3 341 71.0
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 5.0e-132 474.9 333 72.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 5.5e-131 471.5 331 71.6
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.2e-130 470.3 334 71.0
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.6e-130 469.9 335 71.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.5e-130 468.8 332 72.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.3e-129 466.8 335 70.1
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.3e-129 466.1 331 70.7
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 5.1e-129 464.9 329 70.8
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 8.7e-129 464.2 348 68.1
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.9e-128 463.0 338 70.7
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 7.4e-128 461.1 338 68.9
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.1e-126 457.2 336 69.3
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.1e-126 457.2 338 68.6
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.4e-126 456.1 335 69.6
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 6.9e-126 454.5 334 68.9
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.5e-125 453.4 338 69.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 7.7e-125 451.1 333 69.4
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 7.7e-125 451.1 328 69.5
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.3e-124 450.3 336 67.9
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.1e-123 447.2 336 67.9
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.2e-122 443.7 330 67.3
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 4.6e-122 441.8 336 67.9
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.0e-121 440.7 337 65.9
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 3.9e-121 438.7 336 66.7
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 4.3e-120 435.3 333 66.7
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 4.3e-120 435.3 336 65.8
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 5.7e-120 434.9 336 67.0
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 9.7e-120 434.1 331 66.2
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 2.8e-119 432.6 323 71.5
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.2e-119 431.0 333 66.4
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.2e-119 431.0 333 66.4
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.4e-118 430.3 333 66.1
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 9.1e-118 427.6 332 67.5
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.0e-117 426.4 330 66.4
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 4.5e-117 425.2 330 64.5
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.0e-116 424.1 346 64.2
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.9e-116 422.5 331 63.7
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 8.5e-116 421.0 333 63.4
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.2e-115 418.7 329 63.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 6.1e-114 414.8 331 66.8
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.4e-113 413.7 331 66.5
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 1.4e-113 413.7 327 64.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 6.7e-113 411.4 332 62.7
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 2.2e-111 406.4 330 61.8
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.1e-110 404.1 334 61.1
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 3.1e-110 402.5 330 61.5
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 3.1e-110 402.5 330 61.5
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 2.6e-109 399.4 293 69.6
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 4.5e-109 398.7 334 60.2
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 4.5e-109 398.7 334 60.5
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 2.5e-107 392.9 336 60.4
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.1e-106 389.8 327 59.6
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 2.1e-106 389.8 334 59.9
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 6.1e-106 388.3 331 59.8
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 6.1e-106 388.3 328 60.7
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 4.8e-103 378.6 330 59.1
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.4e-102 377.1 323 60.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.4e-102 376.3 327 58.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 5.9e-101 371.7 327 57.8
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 6.5e-100 368.2 329 59.3
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 4.2e-99 365.5 350 56.3
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 9.4e-99 364.4 330 57.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.2e-98 364.0 327 56.6
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 4.7e-98 362.1 318 59.1
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 5.2e-97 358.6 327 56.6
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 7.5e-96 354.8 327 56.0
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.7e-93 346.3 315 58.4
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 3.7e-87 325.9 240 69.2
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 2.9e-79 299.7 273 57.1
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.8e-78 297.0 244 62.7
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.9e-75 287.0 354 44.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 6.2e-74 282.0 334 47.0
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.9e-70 270.4 339 46.0
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 8.6e-60 235.0 463 34.8
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 1.5e-59 234.2 184 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 9.5e-59 231.5 311 41.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.8e-57 227.3 190 61.6
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 5.2e-57 225.7 336 40.2
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.7e-53 213.4 150 70.0
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 7.8e-53 211.8 167 67.1
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 5.6e-51 205.7 339 36.9
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 2.1e-45 187.2 176 60.2
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.3e-36 157.9 146 52.7
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.3e-35 153.3 150 56.0
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 7.4e-35 152.1 171 46.8
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-33 147.5 157 49.7
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 7.6e-32 142.1 152 50.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 9.6e-27 125.2 81 69.1
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 1.7e-23 114.4 133 51.1
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 4.1e-17 93.2 132 40.2
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 9.0e-17 92.0 72 61.1
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.5e-16 91.3 59 64.4
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 6.5e-15 85.9 58 77.6
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 5.5e-14 82.8 75 54.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 3.9e-12 76.6 57 57.9
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 2.8e-10 70.5 49 75.5
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-07 61.2 79 44.3


User provided reference genes

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