Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.4e-158 561.2 280 100.0
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 5.2e-66 255.4 124 96.8
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.4e-65 252.7 124 95.2
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.8e-63 246.9 132 90.2
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.8e-63 246.9 132 90.2
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.1e-63 245.7 132 89.4
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 7.7e-62 241.5 124 88.7
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 3.2e-60 236.1 124 86.3
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.6e-59 233.8 174 63.8
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 4.7e-59 232.3 174 64.9
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 4.7e-59 232.3 174 64.9
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 6.1e-59 231.9 174 64.9
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 3.0e-58 229.6 124 84.7
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 6.8e-58 228.4 166 65.7
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 6.8e-58 228.4 171 65.5
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 6.8e-58 228.4 124 83.1
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 1.2e-57 227.6 124 83.9
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.5e-57 227.3 124 82.3
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.5e-57 227.3 124 82.3
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.0e-57 226.9 165 66.1
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.0e-57 226.9 124 82.3
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 2.6e-57 226.5 124 82.3
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 3.4e-57 226.1 166 65.1
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 3.4e-57 226.1 124 83.9
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 4.4e-57 225.7 165 65.5
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 5.7e-57 225.3 124 81.5
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 5.7e-57 225.3 166 65.1
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 5.7e-57 225.3 174 61.5
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 5.7e-57 225.3 158 67.1
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 1.3e-56 224.2 166 65.7
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 2.8e-56 223.0 166 65.7
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 2.8e-56 223.0 133 75.2
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 4.9e-56 222.2 174 60.9
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 4.9e-56 222.2 166 65.1
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 6.3e-56 221.9 174 62.1
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 6.3e-56 221.9 171 64.3
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 6.3e-56 221.9 171 64.3
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 1.1e-55 221.1 174 62.1
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.1e-55 221.1 173 61.3
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 1.1e-55 221.1 124 79.0
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 1.1e-55 221.1 124 79.8
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.1e-55 221.1 166 64.5
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.4e-55 220.7 124 79.8
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.4e-55 220.7 124 79.0
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.4e-55 220.7 124 81.5
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 1.8e-55 220.3 124 80.6
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 2.4e-55 219.9 124 79.0
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.4e-55 219.9 174 61.5
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.4e-55 219.9 174 62.6
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 3.1e-55 219.5 124 79.0
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 4.1e-55 219.2 174 60.3
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 5.4e-55 218.8 166 62.7
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 5.4e-55 218.8 166 63.9
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 7.0e-55 218.4 124 79.0
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 7.0e-55 218.4 124 79.0
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 9.1e-55 218.0 124 78.2
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 1.2e-54 217.6 174 62.1
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.6e-54 217.2 166 63.3
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 2.7e-54 216.5 127 75.6
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 3.5e-54 216.1 196 57.1
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 7.7e-54 214.9 165 63.0
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.0e-53 214.5 127 74.8
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.0e-53 214.5 127 74.8
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 1.0e-53 214.5 127 74.8
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.0e-53 214.5 127 74.8
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.0e-53 214.5 127 74.8
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 1.3e-53 214.2 165 60.0
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.3e-53 214.2 165 62.4
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.7e-53 213.8 165 60.6
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 2.3e-53 213.4 125 79.2
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 3.8e-53 212.6 165 60.0
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 3.8e-53 212.6 129 76.7
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 3.8e-53 212.6 124 75.8
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 8.6e-53 211.5 165 60.0
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 8.6e-53 211.5 124 74.2
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.1e-52 211.1 124 75.8
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 1.9e-52 210.3 166 60.2
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 1.9e-52 210.3 124 78.2
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.9e-52 210.3 174 60.3
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 3.3e-52 209.5 174 58.0
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 4.2e-52 209.1 165 59.4
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 4.2e-52 209.1 165 59.4
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 4.2e-52 209.1 165 60.6
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 5.5e-52 208.8 124 78.2
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 7.2e-52 208.4 124 77.4
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 9.5e-52 208.0 124 77.4
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 9.5e-52 208.0 124 77.4
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.2e-51 207.6 124 77.4
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 1.6e-51 207.2 124 77.4
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 2.1e-51 206.8 166 63.9
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 2.8e-51 206.5 166 63.9
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.6e-51 206.1 166 59.0
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 1.4e-50 204.1 124 75.0
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 2.3e-50 203.4 165 58.8
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.3e-50 203.4 127 71.7
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.3e-50 203.4 126 72.2
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 4.0e-50 202.6 124 72.6
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 5.2e-50 202.2 124 74.2
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 8.9e-50 201.4 124 74.2
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 4.4e-49 199.1 165 60.0
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 3.2e-47 193.0 124 71.8
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 7.0e-47 191.8 124 71.0
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 2.0e-46 190.3 126 71.4
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 8.6e-45 184.9 124 65.3
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 9.5e-44 181.4 135 64.4
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 5.8e-41 172.2 95 81.1
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 7.5e-41 171.8 94 81.9
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 2.2e-40 170.2 126 61.9
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 3.2e-39 166.4 167 50.3
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 4.1e-39 166.0 102 71.6
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 6.0e-38 162.2 126 62.7
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 6.6e-37 158.7 123 56.9
FAN27G0507 Fragaria x ananassa HOM05D005731 ORTHO05D000222 6.6e-37 158.7 174 58.0
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 2.5e-36 156.8 174 46.6
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 1.1e-34 151.4 124 61.3
FAN13G2494 Fragaria x ananassa HOM05D014123 ORTHO05D022585 7.1e-31 138.7 278 42.1
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 9.2e-31 138.3 91 86.8
FAN24G3567 Fragaria x ananassa HOM05D000599 ORTHO05D000554 1.7e-29 134.0 68 94.1
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.5e-28 130.2 127 53.5
FAN04G2919 Fragaria x ananassa HOM05D000200 ORTHO05D001546 4.3e-28 129.4 62 100.0
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.4e-25 119.8 72 76.4
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 7.6e-25 118.6 131 45.8
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 7.8e-22 108.6 155 41.3
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 7.3e-20 102.1 108 42.6
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 9.6e-20 101.7 67 86.6
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 5.2e-18 95.9 85 65.9
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 2.6e-17 93.6 78 59.0
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 1.3e-16 91.3 141 38.3
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.3e-16 91.3 50 76.0
FAN09G4244 Fragaria x ananassa HOM05D014123 ORTHO05D022585 1.3e-08 64.7 58 65.5
FAN20G2558 Fragaria x ananassa HOM05D005731 ORTHO05D022585 4.9e-08 62.8 69 53.6
FAN12G2040 Fragaria x ananassa HOM05D005731 ORTHO05D000222 6.4e-08 62.4 55 65.5
FAN02G3938 Fragaria x ananassa HOM05D005731 ORTHO05D000222 8.4e-08 62.0 45 75.6
FAN15G0834 Fragaria x ananassa HOM05D014053 ORTHO05D014709 4.2e-07 59.7 48 66.7
FAN09G4534 Fragaria x ananassa HOM05D001855 ORTHO05D012104 1.6e-06 57.8 48 64.6
FAN12G0390 Fragaria x ananassa HOM05D001855 ORTHO05D002034 1.6e-06 57.8 48 64.6
FAN19G2154 Fragaria x ananassa HOM05D001855 ORTHO05D002034 1.6e-06 57.8 48 64.6
FAN25G1756 Fragaria x ananassa HOM05D001855 ORTHO05D002034 1.6e-06 57.8 48 64.6
FAN27G1992 Fragaria x ananassa HOM05D001855 ORTHO05D002034 1.6e-06 57.8 48 64.6
FAN27G2949 Fragaria x ananassa HOM05D001855 ORTHO05D002034 1.6e-06 57.8 48 64.6
FAN03G0392 Fragaria x ananassa HOM05D005731 ORTHO05D012104 4.6e-06 56.2 39 74.4
FAN09G0814 Fragaria x ananassa HOM05D005731 ORTHO05D012104 4.6e-06 56.2 39 74.4
FAN23G2305 Fragaria x ananassa HOM05D005731 ORTHO05D000222 6.0e-06 55.8 37 81.1
FAN15G0041 Fragaria x ananassa HOM05D001855 ORTHO05D002034 7.9e-06 55.5 48 62.5


User provided reference genes

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