Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3608 Fragaria x ananassa HOM05D003441 ORTHO05D199951 3.7e-88 328.2 163 100.0
FAN02G1862 Fragaria x ananassa HOM05D008281 ORTHO05D010793 5.0e-13 78.6 59 62.7
FAN13G1690 Fragaria x ananassa HOM05D008281 ORTHO05D010793 1.1e-12 77.4 52 71.2
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.5e-12 76.3 108 44.4
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.5e-12 76.3 108 44.4
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.3e-12 75.5 108 44.4
FAN02G0163 Fragaria x ananassa HOM05D008281 ORTHO05D001690 7.3e-12 74.7 42 81.0
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 7.3e-12 74.7 66 59.1
FAN16G3190 Fragaria x ananassa HOM05D008281 ORTHO05D010793 7.3e-12 74.7 42 81.0
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 1.6e-11 73.6 76 51.3
FAN24G2743 Fragaria x ananassa HOM05D008281 ORTHO05D010793 1.6e-11 73.6 42 78.6
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 1.6e-11 73.6 76 51.3
FAN24G3415 Fragaria x ananassa HOM05D008281 ORTHO05D010793 2.1e-11 73.2 59 61.0
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 4.7e-11 72.0 66 56.1
FAN08G1944 Fragaria x ananassa HOM05D001293 ORTHO05D001143 8.0e-11 71.2 42 78.6
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 8.0e-11 71.2 66 54.5
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 1.1e-10 70.9 103 40.8
FAN21G1114 Fragaria x ananassa HOM05D000127 ORTHO05D000243 1.4e-10 70.5 42 78.6
FAN16G2065 Fragaria x ananassa HOM05D008281 ORTHO05D010793 1.8e-10 70.1 41 75.6
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 2.3e-10 69.7 97 42.3
FAN02G2667 Fragaria x ananassa HOM05D001313 ORTHO05D001590 3.1e-10 69.3 42 76.2
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 4.0e-10 68.9 52 61.5
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 4.0e-10 68.9 52 61.5
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 4.0e-10 68.9 119 37.8
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 4.0e-10 68.9 52 61.5
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 61.5
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 61.5
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 61.5
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 61.5
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 59.6
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 59.6
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 61.5
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 5.2e-10 68.6 52 61.5
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 5.2e-10 68.6 76 46.1
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 6.8e-10 68.2 95 42.1
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 6.8e-10 68.2 52 61.5
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 6.8e-10 68.2 52 61.5
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 6.8e-10 68.2 52 61.5
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 6.8e-10 68.2 119 37.0
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 6.8e-10 68.2 52 59.6
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 6.8e-10 68.2 52 61.5
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 8.9e-10 67.8 52 57.7
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 8.9e-10 67.8 95 43.2
FAN21G3091 Fragaria x ananassa HOM05D008281 ORTHO05D010793 8.9e-10 67.8 40 75.0
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 8.9e-10 67.8 114 39.5
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 8.9e-10 67.8 50 62.0
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 8.9e-10 67.8 52 59.6
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 1.2e-09 67.4 66 50.0
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 1.2e-09 67.4 52 59.6
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 1.2e-09 67.4 93 40.9
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.5e-09 67.0 69 50.7
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 1.5e-09 67.0 52 59.6
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 2.0e-09 66.6 74 48.6
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 2.0e-09 66.6 74 48.6
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 2.0e-09 66.6 50 62.0
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 2.0e-09 66.6 52 59.6
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 2.0e-09 66.6 101 42.6
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 2.6e-09 66.2 52 57.7
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 2.6e-09 66.2 49 63.3
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 2.6e-09 66.2 49 63.3
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 2.6e-09 66.2 74 48.6
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 3.4e-09 65.9 103 40.8
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 3.4e-09 65.9 52 55.8
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 4.4e-09 65.5 52 57.7
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 4.4e-09 65.5 52 57.7
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 5.8e-09 65.1 52 55.8
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 5.8e-09 65.1 52 55.8
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 5.8e-09 65.1 52 57.7
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 5.8e-09 65.1 49 61.2
FAN16G3238 Fragaria x ananassa HOM05D008281 ORTHO05D010793 5.8e-09 65.1 41 75.6
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 5.8e-09 65.1 100 39.0
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 5.8e-09 65.1 52 57.7
TPR.G33074 Trifolium pratense HOM05D003441 ORTHO05D004516 5.8e-09 65.1 52 57.7
Glyma.08G323500 Glycine max HOM05D003441 ORTHO05D004516 7.5e-09 64.7 50 58.0
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 7.5e-09 64.7 64 50.0
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 7.5e-09 64.7 52 55.8
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 7.5e-09 64.7 52 55.8
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 7.5e-09 64.7 52 55.8
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 57.7
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 9.8e-09 64.3 51 58.8
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 57.7
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 55.8
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 55.8
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 9.8e-09 64.3 95 37.9
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 57.7
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 57.7
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 57.7
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 9.8e-09 64.3 52 57.7
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 9.8e-09 64.3 50 60.0
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 9.8e-09 64.3 50 60.0
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.3e-08 63.9 52 57.7
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 1.3e-08 63.9 52 57.7
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 1.3e-08 63.9 50 58.0
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 1.3e-08 63.9 52 53.8
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.7e-08 63.5 76 44.7
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.7e-08 63.5 76 44.7
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 1.7e-08 63.5 92 41.3
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 2.2e-08 63.2 52 57.7
FAN06G2581 Fragaria x ananassa HOM05D009107 ORTHO05D209187 2.2e-08 63.2 42 71.4
FAN13G0533 Fragaria x ananassa HOM05D008281 ORTHO05D010793 2.2e-08 63.2 41 73.2
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 2.2e-08 63.2 52 55.8
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 2.9e-08 62.8 96 42.7
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 2.9e-08 62.8 52 53.8
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 3.7e-08 62.4 52 53.8
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 3.7e-08 62.4 50 56.0
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 4.9e-08 62.0 113 35.4
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 4.9e-08 62.0 100 38.0
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 6.4e-08 61.6 52 51.9
FvH4_1g29120 Fragaria vesca HOM05D014631 ORTHO05D046469 6.4e-08 61.6 30 93.3
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 6.4e-08 61.6 49 57.1
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 6.4e-08 61.6 50 56.0
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 6.4e-08 61.6 52 53.8
FvH4_2g02941 Fragaria vesca HOM05D008281 ORTHO05D010793 8.3e-08 61.2 41 70.7
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 8.3e-08 61.2 52 51.9
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 8.3e-08 61.2 52 51.9
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 1.4e-07 60.5 50 54.0
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 1.4e-07 60.5 52 53.8
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 2.4e-07 59.7 52 53.8
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 2.4e-07 59.7 52 53.8
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 2.4e-07 59.7 49 55.1
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 3.2e-07 59.3 68 44.1
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 53.8
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 53.8
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 53.8
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 53.8
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 53.8
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 53.8
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 55.8
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 4.1e-07 58.9 52 55.8
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 5.4e-07 58.5 52 55.8
FvH4_1g21381 Fragaria vesca HOM05D008281 ORTHO05D009195 7.1e-07 58.2 42 66.7
FAN24G0201 Fragaria x ananassa HOM05D008281 ORTHO05D010793 7.1e-07 58.2 36 69.4
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 9.2e-07 57.8 94 41.5
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 9.2e-07 57.8 50 54.0
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.2e-07 57.8 52 51.9
FAN13G0442 Fragaria x ananassa HOM05D008281 ORTHO05D010793 1.2e-06 57.4 38 68.4
FAN14G3032 Fragaria x ananassa HOM05D011822 ORTHO05D045563 1.2e-06 57.4 30 96.7
FAN07G2936 Fragaria x ananassa HOM05D014631 ORTHO05D046469 2.7e-06 56.2 30 86.7
FAN13G0383 Fragaria x ananassa HOM05D008281 ORTHO05D010793 2.7e-06 56.2 34 70.6
FAN14G5226 Fragaria x ananassa HOM05D008281 ORTHO05D010793 2.7e-06 56.2 32 78.1
SEGI_31025 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 2.7e-06 56.2 49 49.0
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 4.6e-06 55.5 64 43.8
FAN08G2119 Fragaria x ananassa HOM05D008281 ORTHO05D010793 4.6e-06 55.5 35 74.3
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 6.0e-06 55.1 52 50.0
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.0e-06 55.1 64 42.2
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.0e-06 55.1 64 42.2


User provided reference genes

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