Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3408 Fragaria x ananassa HOM05D001993 ORTHO05D009037 1.6e-126 456.1 223 100.0
FvH4_6g29021 Fragaria vesca HOM05D001993 ORTHO05D009037 1.0e-112 410.2 214 94.9
FAN09G0213 Fragaria x ananassa HOM05D001993 ORTHO05D009037 1.0e-112 410.2 214 94.4
FAN05G0323 Fragaria x ananassa HOM05D001993 ORTHO05D009037 3.8e-112 408.3 214 94.4
RcHm_v2.0_Chr2g0133701 Rosa chinensis HOM05D001993 ORTHO05D009037 5.9e-105 384.4 214 87.9
Prupe.3G094500 Prunus persica HOM05D001993 ORTHO05D009037 4.1e-98 361.7 214 81.3
MD17G1219000 Malus domestica HOM05D001993 ORTHO05D009037 7.7e-97 357.5 214 80.4
Potri.017G053400 Populus trichocarpa HOM05D001993 ORTHO05D009037 3.6e-94 348.6 214 77.6
Thecc.01G153800 Theobroma cacao HOM05D001993 ORTHO05D009037 4.7e-94 348.2 214 79.9
Gorai.004G256300 Gossypium raimondii HOM05D001993 ORTHO05D009037 1.8e-93 346.3 214 79.4
Manes.11G063100 Manihot esculenta HOM05D001993 ORTHO05D009037 3.0e-93 345.5 214 78.5
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 4.0e-93 345.1 214 79.9
CANSAT56G0483 Cannabis sativa HOM05D001993 ORTHO05D009037 6.7e-93 344.4 214 78.0
Gohir.D08G240900 Gossypium hirsutum HOM05D001993 ORTHO05D009037 8.8e-93 344.0 214 79.0
COL.COLO4_33613 Corchorus olitorius HOM05D001993 ORTHO05D009037 1.1e-92 343.6 214 78.0
Ca_01029_v3 Cicer arietinum L. HOM05D001993 ORTHO05D009037 2.6e-92 342.4 214 78.0
TAR625G0584 Trochodendron aralioides HOM05D001993 ORTHO05D009037 3.3e-92 342.0 214 78.0
Lj3g0005746 Lotus japonicus HOM05D001993 ORTHO05D009037 5.7e-92 341.3 214 77.6
Gohir.A08G221654 Gossypium hirsutum HOM05D001993 ORTHO05D009037 1.3e-91 340.1 214 78.5
Medtr2g104760 Medicago truncatula HOM05D001993 ORTHO05D009037 1.3e-91 340.1 214 76.2
Sed0024162 Sechium edule HOM05D001993 ORTHO05D009037 1.7e-91 339.7 214 76.6
Haze_16628 Corylus avellana HOM05D001993 ORTHO05D009037 2.2e-91 339.3 214 78.0
CiPaw.01G251700 Carya illinoinensis HOM05D001993 ORTHO05D009037 6.3e-91 337.8 222 74.3
Eucgr.J03091 Eucalyptus grandis HOM05D001993 ORTHO05D009037 1.1e-90 337.0 214 76.2
Haze_16631 Corylus avellana HOM05D001993 ORTHO05D009037 1.4e-90 336.7 214 77.6
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 1.4e-90 336.7 214 78.0
CsaV3_7G032050 Cucumis sativus L. HOM05D001993 ORTHO05D009037 1.8e-90 336.3 214 76.2
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 1.8e-90 336.3 214 73.8
Cfa001914 Carpinus fangiana HOM05D001993 ORTHO05D009037 2.4e-90 335.9 214 77.6
Atru.chr13.159 Acer truncatum HOM05D001993 ORTHO05D009037 4.1e-90 335.1 214 76.6
Duzib147G1049 Durio zibethinus HOM05D001993 ORTHO05D009037 5.3e-90 334.7 214 76.2
Cpa.g.sc10.126 Carica papaya HOM05D001993 ORTHO05D009037 9.1e-90 334.0 214 78.5
MELO3C023452.2 Cucumis melo HOM05D001993 ORTHO05D009037 9.1e-90 334.0 214 75.2
Glyma.15G004900 Glycine max HOM05D001993 ORTHO05D009037 3.5e-89 332.0 214 75.2
ClCG09G003170 Citrullus lanatus HOM05D001993 ORTHO05D009037 5.9e-89 331.3 214 74.8
Glyma.13G368900 Glycine max HOM05D001993 ORTHO05D009037 7.7e-89 330.9 214 74.8
Nn8g39702 Nelumbo nucifera HOM05D001993 ORTHO05D009037 7.7e-89 330.9 214 74.3
TPR.G19157 Trifolium pratense HOM05D001993 ORTHO05D009037 1.3e-88 330.1 214 74.3
VMungo1080G1544 Vigna mungo HOM05D001993 ORTHO05D009037 1.3e-88 330.1 214 74.8
TPR.G8903 Trifolium pratense HOM05D001993 ORTHO05D009037 5.0e-88 328.2 214 74.8
Ciclev10025548m.g Citrus clementina HOM05D001993 ORTHO05D009037 1.1e-87 327.0 214 75.7
Psat5g303960 Pisum sativum HOM05D001993 ORTHO05D009037 1.9e-87 326.2 214 73.4
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 4.2e-87 325.1 214 73.4
vmacro16868 Vaccinium macrocarpon HOM05D001993 ORTHO05D009037 2.1e-86 322.8 214 73.8
Phvul.005G181200 Phaseolus vulgaris HOM05D001993 ORTHO05D009037 2.7e-86 322.4 214 72.9
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 6.1e-86 321.2 222 71.2
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 1.0e-85 320.5 214 71.5
THA.LOC104808190 Tarenaya hassleriana HOM05D001993 ORTHO05D009037 6.8e-85 317.8 214 71.5
TWI12G1056 Tripterygium wilfordii HOM05D001993 ORTHO05D009037 8.8e-85 317.4 214 72.0
CSS0028818 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D009037 2.0e-84 316.2 214 73.4
ATR0767G064 Amborella trichopoda HOM05D001993 ORTHO05D009037 3.4e-84 315.5 214 71.0
arahy.Tifrunner.gnm1.ann1.8N7B8R Arachis hypogaea HOM05D001993 ORTHO05D009037 3.4e-84 315.5 214 70.6
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 3.4e-84 315.5 214 71.5
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 7.5e-84 314.3 214 72.0
Nitab4.5_0000233g0190 Nicotiana tabacum HOM05D001993 ORTHO05D009037 2.8e-83 312.4 214 71.5
Aa31LG4G850 Aethionema arabicum HOM05D001993 ORTHO05D009037 4.1e-82 308.5 214 70.6
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 4.1e-82 308.5 214 69.6
AUR62011454 Chenopodium quinoa HOM05D001993 ORTHO05D009037 5.4e-82 308.1 214 70.1
Lj5C77T4 Lonicera japonica HOM05D001993 ORTHO05D009037 5.4e-82 308.1 214 70.1
AUR62016603 Chenopodium quinoa HOM05D001993 ORTHO05D009037 7.0e-82 307.8 214 70.1
SEGI_33239 Sequoiadendron giganteum HOM05D001993 ORTHO05D009037 9.1e-82 307.4 214 68.2
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 1.2e-81 307.0 214 69.2
Sp5g35200 Schrenkiella parvula HOM05D001993 ORTHO05D009037 1.6e-81 306.6 214 69.2
PGSC0003DMG400024263 Solanum tuberosum HOM05D001993 ORTHO05D009037 2.0e-81 306.2 214 71.0
Sopen09g006100 Solanum pennellii HOM05D001993 ORTHO05D009037 2.7e-81 305.8 214 71.0
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 5.9e-81 304.7 214 68.7
ECA246G3767 Erigeron canadensis HOM05D001993 ORTHO05D009037 1.3e-80 303.5 214 66.8
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 1.3e-80 303.5 214 69.6
Sabra17G0045400 Salix brachista HOM05D001993 ORTHO05D009037 1.7e-80 303.1 214 70.1
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 2.2e-80 302.8 222 65.8
BcaC03g15951 Brassica carinata HOM05D001993 ORTHO05D009037 5.0e-80 301.6 214 65.9
Carub.0002s2697 Capsella rubella HOM05D001993 ORTHO05D009037 5.0e-80 301.6 214 67.8
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 5.0e-80 301.6 214 67.8
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 6.5e-80 301.2 214 65.9
Sabra17G0040600 Salix brachista HOM05D001993 ORTHO05D009037 1.9e-79 299.7 214 69.2
Solyc09g011370.3 Solanum lycopersicum HOM05D001993 ORTHO05D009037 1.9e-79 299.7 214 70.1
AT1G80570 Arabidopsis thaliana HOM05D001993 ORTHO05D009037 2.5e-79 299.3 214 67.8
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 2.5e-79 299.3 214 68.2
PGR031G2325 Punica granatum HOM05D001993 ORTHO05D009037 4.2e-79 298.5 214 67.8
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 4.2e-79 298.5 189 78.8
CAN.G697.13 Capsicum annuum HOM05D001993 ORTHO05D009037 1.6e-78 296.6 214 69.2
CARHR073940 Cardamine hirsuta HOM05D001993 ORTHO05D009037 3.6e-78 295.4 214 67.3
Hma1.2p1_0109F.1_g052250 Hydrangea macrophylla HOM05D001993 ORTHO05D009037 8.0e-78 294.3 214 68.7
QL05p033907 Quercus lobata HOM05D001993 ORTHO05D009037 4.0e-77 292.0 214 68.7
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 3.4e-76 288.9 214 65.4
Cc04_g04800 Coffea canephora HOM05D001993 ORTHO05D009037 1.8e-74 283.1 214 65.0
Nn2g12225 Nelumbo nucifera HOM05D001993 ORTHO05D009037 3.8e-72 275.4 210 64.3
BcaB05g25256 Brassica carinata HOM05D001993 ORTHO05D009037 1.1e-71 273.9 214 62.6
Thhalv10018507m.g Eutrema salsugineum HOM05D001993 ORTHO05D009037 5.2e-69 265.0 214 61.7
FAN05G0349 Fragaria x ananassa HOM05D001993 ORTHO05D009037 6.8e-69 264.6 138 94.9
Actinidia30712 Actinidia chinensis HOM05D001993 ORTHO05D009037 1.2e-68 263.8 164 76.8
AL2G40860 Arabidopsis lyrata HOM05D001993 ORTHO05D009037 1.5e-68 263.5 214 61.7
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 8.3e-67 257.7 195 63.6
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 1.1e-66 257.3 187 64.7
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 1.6e-65 253.4 187 64.2
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 1.4e-61 240.4 209 59.3
Sc12g0006740 Simmondsia chinensis HOM05D001993 ORTHO05D009037 3.5e-57 225.7 146 72.6
Os02g0798900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.5e-55 219.5 196 54.1
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 1.8e-53 213.4 215 50.7
Os12g0516900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 6.0e-49 198.4 222 43.2
Os12g0517000 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 6.8e-45 184.9 222 44.1
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 8.9e-45 184.5 203 44.8
Os04g0370600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.6e-44 183.0 214 41.6
Mapoly0145s0024 Marchantia polymorpha HOM05D001993 ORTHO05D009037 1.7e-43 180.3 211 40.3
Os04g0370500 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 3.9e-40 169.1 208 41.8
Os12g0517100 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.2e-38 164.1 225 40.4
Hund06538 Selenicereus undatus HOM05D001993 ORTHO05D009037 1.2e-38 164.1 103 73.8
Os04g0370300 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.4e-37 159.8 190 43.2
Os04g0371600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.3e-27 127.5 170 41.2
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 3.5e-09 66.2 246 27.2
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 3.0e-08 63.2 207 25.1
Aa31LG1G23340 Aethionema arabicum HOM05D002125 ORTHO05D002105 6.7e-08 62.0 186 29.6
Hund03802 Selenicereus undatus HOM05D002125 ORTHO05D002105 1.5e-07 60.8 171 25.7
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 2.5e-07 60.1 208 27.9
Sc20g0006750 Simmondsia chinensis HOM05D002125 ORTHO05D002105 2.5e-07 60.1 77 39.0
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 4.3e-07 59.3 158 29.7
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 5.7e-07 58.9 122 28.7
Lj4g0025766 Lotus japonicus HOM05D001905 ORTHO05D001820 5.7e-07 58.9 146 30.1
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 7.4e-07 58.5 207 23.7
SEGI_38001 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 7.4e-07 58.5 175 26.9
AL6G10330 Arabidopsis lyrata HOM05D002125 ORTHO05D002105 1.3e-06 57.8 174 28.2
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 1.3e-06 57.8 207 26.1
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 1.6e-06 57.4 207 25.6
Sabra16G0130000 Salix brachista HOM05D002125 ORTHO05D002105 1.6e-06 57.4 84 34.5
AT5G01720 Arabidopsis thaliana HOM05D002125 ORTHO05D002105 2.1e-06 57.0 173 28.9
COL.COLO4_14438 Corchorus olitorius HOM05D002125 ORTHO05D002105 2.1e-06 57.0 168 25.0
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 2.1e-06 57.0 246 26.8
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 2.1e-06 57.0 199 23.6
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 2.1e-06 57.0 206 29.1
AagrBONN_evm.TU.Sc2ySwM_344.1231 Anthoceros agrestis HOM05D001905 ORTHO05D001820 2.8e-06 56.6 154 30.5
BcaB01g06250 Brassica carinata HOM05D002125 ORTHO05D002105 2.8e-06 56.6 168 26.8
Nitab4.5_0003497g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 2.8e-06 56.6 125 28.8
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 3.7e-06 56.2 77 35.1
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 3.7e-06 56.2 273 22.0
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 3.7e-06 56.2 204 29.4
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 4.8e-06 55.8 206 26.7
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 6.3e-06 55.5 204 27.9
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 6.3e-06 55.5 204 27.9
THA.LOC104821244 Tarenaya hassleriana HOM05D001905 ORTHO05D001820 6.3e-06 55.5 218 26.6


User provided reference genes

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