Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.4e-245 851.3 446 100.0
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.8e-237 823.9 446 97.8
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 7.6e-237 823.5 446 97.1
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.2e-228 795.4 453 92.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.1e-227 793.1 422 97.9
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.5e-208 729.6 456 84.4
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.4e-190 669.1 456 77.2
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 5.3e-190 667.9 450 77.6
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 9.4e-187 657.1 461 76.8
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.1e-186 656.0 441 79.4
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.4e-185 653.3 456 76.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.3e-185 652.5 455 75.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 6.7e-185 651.0 459 78.0
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.4e-184 648.3 449 76.2
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.8e-183 645.6 362 91.2
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 3.7e-183 645.2 453 76.6
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 6.3e-183 644.4 450 75.1
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.6e-181 639.8 456 75.2
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.3e-180 636.7 456 75.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.7e-180 636.3 447 75.6
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 3.8e-180 635.2 456 77.4
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.8e-180 635.2 462 74.2
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.1e-179 633.6 447 75.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.5e-179 633.3 447 74.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.5e-179 632.5 454 75.6
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.2e-179 632.1 453 75.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.2e-179 632.1 455 74.7
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 4.2e-179 631.7 457 74.8
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 4.2e-179 631.7 454 75.6
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.2e-178 630.2 454 75.3
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.6e-178 629.8 443 74.7
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.6e-178 629.8 451 74.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 2.7e-178 629.0 457 74.6
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 6.1e-178 627.9 461 75.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.0e-177 627.1 459 73.6
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.4e-177 626.7 451 75.2
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.4e-177 626.7 453 74.6
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.4e-177 626.7 449 75.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.4e-177 626.7 452 74.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.8e-177 626.3 449 75.3
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.3e-177 625.9 449 75.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 8.8e-177 624.0 454 74.2
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.2e-176 623.6 447 74.3
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 9.7e-176 620.5 460 72.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 9.7e-176 620.5 455 74.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.7e-175 619.8 459 73.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.8e-175 618.2 453 74.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 8.2e-175 617.5 453 74.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.2e-175 617.5 456 75.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 9.1e-174 614.0 449 73.1
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.5e-173 612.1 454 74.9
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.0e-172 610.5 452 74.6
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.0e-172 610.5 454 72.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.0e-172 608.2 454 72.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.1e-171 607.1 450 71.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.2e-170 603.6 422 74.2
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-170 602.1 456 71.5
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-170 602.1 455 71.9
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-170 602.1 455 71.9
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 4.0e-169 598.6 451 70.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 4.0e-169 598.6 452 71.9
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.2e-169 598.2 449 70.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.5e-168 596.7 453 70.9
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.6e-168 595.9 451 69.6
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.4e-168 595.5 456 69.5
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 3.4e-168 595.5 453 70.2
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.4e-168 595.1 453 70.6
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.2e-167 592.8 453 68.9
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.8e-167 592.4 457 72.6
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.4e-166 590.1 448 70.1
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.1e-166 589.0 451 69.8
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.1e-166 588.6 456 69.7
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.1e-166 588.6 438 71.9
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.6e-165 586.6 461 69.2
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.7e-165 585.9 448 70.8
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.0e-164 583.9 446 70.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.3e-164 583.6 449 68.8
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 2.9e-164 582.4 448 69.9
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.9e-163 579.7 454 69.6
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 3.3e-163 578.9 448 69.6
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 4.2e-163 578.6 453 71.7
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.2e-162 577.0 456 68.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 2.1e-162 576.2 448 69.6
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.0e-161 573.9 451 69.2
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.0e-161 573.9 451 68.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.0e-161 572.4 451 67.8
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.0e-161 572.4 456 70.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.0e-160 569.7 445 68.3
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-160 569.7 445 68.3
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.0e-160 569.7 445 68.3
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.0e-160 569.7 449 67.3
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.6e-160 569.3 450 68.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.9e-159 565.1 456 68.0
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.9e-159 565.1 456 68.0
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.1e-158 562.0 362 80.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 9.2e-158 560.8 449 66.6
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 7.3e-155 551.2 341 81.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-153 546.6 365 75.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.1e-150 537.3 399 72.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.6e-146 523.5 451 64.5
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.3e-139 499.2 450 63.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.8e-137 491.5 308 80.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.6e-136 489.6 457 60.6
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.6e-133 480.3 311 78.5
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.6e-130 469.2 307 78.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 6.2e-130 468.4 290 82.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.2e-122 441.8 282 79.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.9e-120 434.5 301 73.8
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 5.4e-118 428.7 372 61.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.1e-117 426.8 376 59.8
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.5e-117 426.0 280 75.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.0e-116 424.5 374 61.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.3e-116 423.3 421 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 9.0e-113 411.4 389 55.8
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 7.6e-112 408.3 281 76.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.4e-110 404.1 374 56.4
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 3.8e-103 379.4 323 63.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.1e-100 369.0 378 55.3
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-99 367.9 368 55.2
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.6e-98 364.0 337 58.8
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-94 351.3 395 51.6
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.5e-94 350.1 384 52.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.7e-93 346.7 369 50.9
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 8.8e-84 315.1 243 67.5
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 2.5e-83 313.5 360 50.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.2e-82 310.5 375 46.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 5.9e-72 275.8 332 50.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-52 211.5 345 41.4
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 2.0e-51 207.6 150 70.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 2.1e-45 187.6 222 50.0
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.9e-44 182.2 164 58.5
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.3e-38 162.5 115 69.6
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.0e-33 146.0 92 77.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.2e-32 145.2 118 60.2
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-31 139.8 171 48.5
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.6e-31 139.0 107 65.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.3e-23 115.2 73 79.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.2e-21 106.3 87 69.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.9e-18 96.7 102 52.9
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.9e-14 84.7 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.3e-09 65.9 51 68.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 9.3e-09 65.9 165 35.8


User provided reference genes

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