Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3085 Fragaria x ananassa HOM05D001251 ORTHO05D004135 7.3e-74 280.4 137 100.0
FAN03G1652 Fragaria x ananassa HOM05D001251 ORTHO05D004135 7.3e-74 280.4 137 100.0
FAN24G2965 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.1e-72 275.0 136 98.5
FAN17G2333 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.4e-71 271.6 133 98.5
FAN15G2528 Fragaria x ananassa HOM05D001251 ORTHO05D004135 9.6e-66 253.4 123 99.2
FAN01G0834 Fragaria x ananassa HOM05D001251 ORTHO05D004135 5.6e-58 227.6 113 96.5
FvH4_7g17850 Fragaria vesca HOM05D001251 ORTHO05D004135 1.3e-57 226.5 113 96.5
FAN01G1785 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.3e-57 226.5 113 96.5
FAN10G0258 Fragaria x ananassa HOM05D001251 ORTHO05D004135 2.4e-56 222.2 113 94.7
FAN10G4260 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.1e-56 221.9 113 94.7
FAN03G0514 Fragaria x ananassa HOM05D001251 ORTHO05D004135 4.0e-56 221.5 113 94.7
FAN06G3608 Fragaria x ananassa HOM05D001251 ORTHO05D004135 4.0e-56 221.5 113 94.7
FAN06G1969 Fragaria x ananassa HOM05D001251 ORTHO05D004135 2.6e-55 218.8 112 93.8
RcHm_v2.0_Chr1g0361301 Rosa chinensis HOM05D001251 ORTHO05D004135 6.0e-52 207.6 113 89.4
Prupe.2G200400 Prunus persica HOM05D001251 ORTHO05D004135 3.6e-36 155.2 113 71.7
MD01G1090900 Malus domestica HOM05D001251 ORTHO05D004135 1.4e-29 133.3 106 67.0
Ciclev10018964m.g Citrus clementina HOM05D001251 ORTHO05D004135 1.5e-26 123.2 109 57.8
Duzib133G0065 Durio zibethinus HOM05D001251 ORTHO05D004135 8.2e-25 117.5 113 58.4
Sabra14G0079000 Salix brachista HOM05D001251 ORTHO05D004135 1.4e-24 116.7 110 58.2
QL08p047700 Quercus lobata HOM05D001251 ORTHO05D004135 2.4e-24 115.9 113 57.5
TAR374G0209 Trochodendron aralioides HOM05D001251 ORTHO05D004135 3.1e-24 115.5 117 59.8
Thecc.01G332000 Theobroma cacao HOM05D001251 ORTHO05D004135 9.1e-24 114.0 115 57.4
COL.COLO4_23060 Corchorus olitorius HOM05D001251 ORTHO05D004135 2.6e-23 112.5 114 57.9
Atru.chr5.788 Acer truncatum HOM05D001251 ORTHO05D004135 1.7e-22 109.8 104 55.8
Cpa.g.sc57.78 Carica papaya HOM05D001251 ORTHO05D004135 3.8e-22 108.6 116 55.2
CiPaw.01G085700 Carya illinoinensis HOM05D001251 ORTHO05D004135 3.8e-22 108.6 116 55.2
Gohir.D12G121100 Gossypium hirsutum HOM05D001251 ORTHO05D004135 6.5e-22 107.8 115 55.7
Gohir.A12G117400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 8.5e-22 107.5 116 56.9
Dinv34262 Davidia involucrata HOM05D001251 ORTHO05D004135 1.1e-21 107.1 116 53.4
Potri.002G180800 Populus trichocarpa HOM05D001251 ORTHO05D004135 1.5e-21 106.7 117 54.7
Potri.014G106800 Populus trichocarpa HOM05D001251 ORTHO05D004135 1.5e-21 106.7 115 53.9
Gohir.A12G117500 Gossypium hirsutum HOM05D001251 ORTHO05D004135 2.5e-21 105.9 115 53.9
Haze_15754 Corylus avellana HOM05D001251 ORTHO05D004135 3.2e-21 105.5 116 52.6
Cfa003724 Carpinus fangiana HOM05D001251 ORTHO05D004135 4.2e-21 105.1 112 56.2
Gorai.008G132000 Gossypium raimondii HOM05D001251 ORTHO05D004135 4.2e-21 105.1 115 54.8
Duzib138G1188 Durio zibethinus HOM05D001251 ORTHO05D004135 5.5e-21 104.8 115 56.5
Gorai.008G131800 Gossypium raimondii HOM05D001251 ORTHO05D004135 1.2e-20 103.6 116 56.0
Eucgr.D02651 Eucalyptus grandis HOM05D001251 ORTHO05D004135 6.1e-20 101.3 114 51.8
Gohir.D12G121000 Gossypium hirsutum HOM05D001251 ORTHO05D004135 6.1e-20 101.3 116 55.2
PGR031G0915 Punica granatum HOM05D001251 ORTHO05D004135 2.3e-19 99.4 88 59.1
Dinv32652 Davidia involucrata HOM05D001251 ORTHO05D004135 3.0e-19 99.0 124 50.0
Hma1.2p1_0074F.1_g038840 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 1.2e-18 97.1 118 51.7
VMungo1309G2431 Vigna mungo HOM05D001251 ORTHO05D004135 1.5e-18 96.7 87 57.5
arahy.Tifrunner.gnm1.ann1.GF54Z4 Arachis hypogaea HOM05D001251 ORTHO05D004135 2.0e-18 96.3 87 58.6
Manes.05G015600 Manihot esculenta HOM05D001251 ORTHO05D004135 2.0e-18 96.3 105 52.4
CiPaw.02G045300 Carya illinoinensis HOM05D001251 ORTHO05D004135 3.4e-18 95.5 127 44.9
Glyma.03G261800 Glycine max HOM05D001251 ORTHO05D004135 3.4e-18 95.5 112 51.8
Gohir.A11G101800 Gossypium hirsutum HOM05D001251 ORTHO05D004135 3.4e-18 95.5 113 47.8
Nn1g00457 Nelumbo nucifera HOM05D001251 ORTHO05D004135 5.7e-18 94.7 114 53.5
arahy.Tifrunner.gnm1.ann1.P5534Y Arachis hypogaea HOM05D001251 ORTHO05D004135 7.5e-18 94.4 87 57.5
arahy.Tifrunner.gnm1.ann1.0U0SSW Arachis hypogaea HOM05D001251 ORTHO05D004135 1.3e-17 93.6 63 69.8
arahy.Tifrunner.gnm1.ann1.J7VJ5I Arachis hypogaea HOM05D001251 ORTHO05D004135 1.3e-17 93.6 63 69.8
ClCG06G002330 Citrullus lanatus HOM05D001251 ORTHO05D004135 1.3e-17 93.6 96 52.1
SalBow5G5002 Salvia bowleyana HOM05D001251 ORTHO05D004135 1.3e-17 93.6 94 58.5
Hma1.2p1_2492F.1_g323260 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 1.7e-17 93.2 116 50.9
PSO782G0772 Papaver somniferum HOM05D001251 ORTHO05D004135 2.8e-17 92.4 105 51.4
CsaV3_6G008360 Cucumis sativus L. HOM05D001251 ORTHO05D004135 3.7e-17 92.0 110 46.4
TWI14G1269 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 3.7e-17 92.0 116 49.1
Sabra02G0133600 Salix brachista HOM05D001251 ORTHO05D004135 4.8e-17 91.7 109 50.5
Lalb_Chr15g0076591 Lupinus albus HOM05D001251 ORTHO05D004135 6.3e-17 91.3 85 56.5
Gohir.D11G106400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 8.3e-17 90.9 117 46.2
Glyma.19G260900 Glycine max HOM05D001251 ORTHO05D004135 1.4e-16 90.1 112 49.1
MELO3C022302.2 Cucumis melo HOM05D001251 ORTHO05D004135 1.8e-16 89.7 110 46.4
Ca_09556_v3 Cicer arietinum L. HOM05D001251 ORTHO05D004135 2.4e-16 89.4 63 68.3
Gorai.007G113900 Gossypium raimondii HOM05D001251 ORTHO05D004135 2.4e-16 89.4 117 46.2
TPR.G4678 Trifolium pratense HOM05D001251 ORTHO05D004135 3.1e-16 89.0 63 68.3
vmacro12634 Vaccinium macrocarpon HOM05D001251 ORTHO05D004135 3.1e-16 89.0 122 48.4
Cc02_g39990 Coffea canephora HOM05D001251 ORTHO05D004135 4.1e-16 88.6 112 48.2
Manes.01G239000 Manihot esculenta HOM05D001251 ORTHO05D004135 9.1e-16 87.4 97 51.5
Phvul.009G259400 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.6e-15 86.7 87 56.3
Phvul.010G120401 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.6e-15 86.7 58 74.1
Lalb_Chr18g0044761 Lupinus albus HOM05D001251 ORTHO05D004135 3.5e-15 85.5 59 66.1
PSO063G2933 Papaver somniferum HOM05D001251 ORTHO05D004135 5.9e-15 84.7 97 47.4
Psat3g000720 Pisum sativum HOM05D001251 ORTHO05D004135 7.7e-15 84.3 112 44.6
Phvul.009G259650 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.0e-14 84.0 86 55.8
DCAR_006991 Daucus carota HOM05D001251 ORTHO05D004135 1.3e-14 83.6 103 49.5
TWI23G1207 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 1.3e-14 83.6 111 46.8
MSTRG.4794 Avicennia marina HOM05D001251 ORTHO05D004135 1.7e-14 83.2 114 44.7
Glyma.16G017400 Glycine max HOM05D001251 ORTHO05D004135 2.2e-14 82.8 59 67.8
Glyma.07G048500 Glycine max HOM05D001251 ORTHO05D004135 2.9e-14 82.4 116 45.7
Peaxi162Scf00092g01519 Petunia axillaris HOM05D001251 ORTHO05D004135 2.9e-14 82.4 117 48.7
AUR62004570 Chenopodium quinoa HOM05D001251 ORTHO05D004135 3.8e-14 82.0 102 51.0
VMungo0331G1277 Vigna mungo HOM05D001251 ORTHO05D004135 3.8e-14 82.0 87 58.6
CAN.G1150.2 Capsicum annuum HOM05D001251 ORTHO05D004135 5.0e-14 81.6 115 46.1
Medtr7g118330 Medicago truncatula HOM05D001251 ORTHO05D004135 6.5e-14 81.3 110 44.5
Ah.05g178860 Amaranthus hybridus HOM05D001251 ORTHO05D004135 8.5e-14 80.9 87 49.4
AUR62022683 Chenopodium quinoa HOM05D001251 ORTHO05D004135 8.5e-14 80.9 98 52.0
TAR629G3201 Trochodendron aralioides HOM05D001251 ORTHO05D004135 8.5e-14 80.9 120 43.3
Hund16759 Selenicereus undatus HOM05D001251 ORTHO05D004135 1.1e-13 80.5 118 42.4
Oeu053268.1 Olea europaea HOM05D001251 ORTHO05D004135 1.5e-13 80.1 64 64.1
Migut.N01518 Erythranthe guttata HOM05D001251 ORTHO05D004135 1.9e-13 79.7 111 45.9
Lj3g0020484 Lotus japonicus HOM05D001251 ORTHO05D004135 5.5e-13 78.2 59 64.4
Oeu064410.3 Olea europaea HOM05D001251 ORTHO05D004135 1.2e-12 77.0 59 69.5
Solyc10g005080.3 Solanum lycopersicum HOM05D001251 ORTHO05D004135 1.2e-12 77.0 116 45.7
SGA_v2.0_scaffold232G43523 Striga asiatica HOM05D001251 ORTHO05D004135 1.2e-12 77.0 113 44.2
MBI12_g27877_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 1.6e-12 76.6 116 44.8
EL10Ac1g00171 Beta vulgaris HOM05D001251 ORTHO05D004135 2.1e-12 76.3 101 43.6
CSS0039199 Camellia sinensis var. sinensis HOM05D001251 ORTHO05D004135 2.1e-12 76.3 62 64.5
Nitab4.5_0005359g0030 Nicotiana tabacum HOM05D001251 ORTHO05D004135 3.6e-12 75.5 113 45.1
Lalb_Chr10g0100921 Lupinus albus HOM05D001251 ORTHO05D004135 6.1e-12 74.7 112 42.0
Sopen10g001100 Solanum pennellii HOM05D001251 ORTHO05D004135 6.1e-12 74.7 116 44.8
Nitab4.5_0007792g0010 Nicotiana tabacum HOM05D001251 ORTHO05D004135 8.0e-12 74.3 114 43.9
Actinidia01529 Actinidia chinensis HOM05D001251 ORTHO05D004135 4.0e-11 72.0 81 48.1
Sed0027265 Sechium edule HOM05D001251 ORTHO05D004135 1.2e-10 70.5 97 43.3
HanXRQChr15g0489581 Helianthus annuus HOM05D001251 ORTHO05D004135 1.5e-10 70.1 80 46.2
Thhalv10007028m.g Eutrema salsugineum HOM05D001251 ORTHO05D004135 2.0e-10 69.7 62 56.5
Sp1g01250 Schrenkiella parvula HOM05D001251 ORTHO05D004135 2.6e-10 69.3 62 56.5
AL1G11460 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 3.4e-10 68.9 76 50.0
Aa31LG1G10420 Aethionema arabicum HOM05D001251 ORTHO05D004135 4.4e-10 68.6 62 58.1
ECA240G1436 Erigeron canadensis HOM05D001251 ORTHO05D004135 4.4e-10 68.6 107 42.1
AT1G01060 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 5.7e-10 68.2 62 56.5
A10p00850 Brassica napus HOM05D001251 ORTHO05D004135 5.7e-10 68.2 76 48.7
C05p00880 Brassica napus HOM05D001251 ORTHO05D004135 5.7e-10 68.2 76 48.7
BolC5t28872H Brassica oleracea HOM05D001251 ORTHO05D004135 5.7e-10 68.2 76 48.7
BraA10t42363Z Brassica rapa HOM05D001251 ORTHO05D004135 5.7e-10 68.2 76 48.7
THA.LOC104827645 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 5.7e-10 68.2 109 41.3
Sc26g0000440 Simmondsia chinensis HOM05D001251 ORTHO05D004135 7.5e-10 67.8 88 44.3
Lj9C609G5 Lonicera japonica HOM05D001251 ORTHO05D004135 9.8e-10 67.4 117 42.7
THA.LOC104825910 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 9.8e-10 67.4 57 61.4
Oeu034954.1 Olea europaea HOM05D001251 ORTHO05D004135 1.3e-09 67.0 138 37.7
THA.LOC104803067 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 2.2e-09 66.2 117 37.6
CARHR142180 Cardamine hirsuta HOM05D001251 ORTHO05D004135 2.8e-09 65.9 59 55.9
AL4G46300 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 3.7e-09 65.5 61 59.0
AT2G46830 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 3.7e-09 65.5 61 59.0
Sp4g28860 Schrenkiella parvula HOM05D001251 ORTHO05D004135 4.8e-09 65.1 110 38.2
MBI04_g18999_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 6.3e-09 64.7 62 56.5
Sed0026128 Sechium edule HOM05D001251 ORTHO05D004135 6.3e-09 64.7 71 49.3
Carub.0004s2954 Capsella rubella HOM05D001251 ORTHO05D004135 1.1e-08 63.9 61 55.7
Os08g0157600 Oryza sativa ssp. japonica HOM05D001251 ORTHO05D004135 1.8e-08 63.2 48 70.8
unitig_45.g31541 Utricularia gibba HOM05D001251 ORTHO05D004135 1.8e-08 63.2 60 53.3
HanXRQChr09g0264401 Helianthus annuus HOM05D001251 ORTHO05D004135 2.4e-08 62.8 64 53.1
CARHR001420 Cardamine hirsuta HOM05D001251 ORTHO05D004135 3.1e-08 62.4 46 63.0
BcaB01g06139 Brassica carinata HOM05D001251 ORTHO05D004135 9.1e-08 60.8 141 34.0
BolC3t12576H Brassica oleracea HOM05D001251 ORTHO05D004135 9.1e-08 60.8 141 34.0
C03p00110 Brassica napus HOM05D001251 ORTHO05D004135 1.6e-07 60.1 48 66.7
THA.LOC104815900 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.6e-07 60.1 63 50.8
BraA08t35670Z Brassica rapa HOM05D001251 ORTHO05D004135 2.0e-07 59.7 141 36.2
Carub.0001s0116 Capsella rubella HOM05D001251 ORTHO05D004135 2.0e-07 59.7 62 53.2
Zm00001eb415760 Zea mays HOM05D001251 ORTHO05D004135 2.0e-07 59.7 48 66.7
Aa31LG1G28200 Aethionema arabicum HOM05D001251 ORTHO05D004135 4.5e-07 58.5 146 33.6
HanXRQChr15g0489571 Helianthus annuus HOM05D001251 ORTHO05D004135 2.9e-06 55.8 77 42.9
Lsat_1_v5_gn_3_140720 Lactuca sativa HOM05D001251 ORTHO05D004135 5.0e-06 55.1 67 46.3
BolC7t40758H Brassica oleracea HOM05D001251 ORTHO05D004135 8.6e-06 54.3 50 62.0
HanXRQChr09g0264411 Helianthus annuus HOM05D001251 ORTHO05D004135 8.6e-06 54.3 48 56.2


User provided reference genes

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