Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-98 363.2 184 100.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.7e-98 360.9 184 98.9
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.5e-98 360.5 184 98.9
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.7e-97 359.4 184 97.8
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.7e-94 349.4 177 99.4
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-94 349.4 177 99.4
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 7.3e-93 344.0 184 92.4
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 2.1e-92 342.4 184 91.3
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 3.6e-92 341.7 184 91.3
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 2.0e-87 325.9 184 85.3
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.7e-86 322.8 184 83.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 3.0e-86 322.0 184 86.4
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 6.6e-86 320.9 184 83.7
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 6.6e-86 320.9 184 83.7
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.1e-85 320.1 178 86.0
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.9e-85 319.3 184 83.2
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.9e-85 319.3 184 83.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 3.3e-85 318.5 184 84.2
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 5.6e-85 317.8 184 85.3
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 7.3e-85 317.4 184 82.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 9.5e-85 317.0 184 84.2
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.1e-84 315.8 184 81.0
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.1e-84 315.8 184 83.2
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 84.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 83.2
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 83.2
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 3.6e-84 315.1 184 84.2
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 6.2e-84 314.3 184 81.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 82.1
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-83 313.5 184 81.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-83 312.8 184 83.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-83 312.8 184 83.2
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.8e-83 312.8 184 81.0
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.8e-83 312.8 184 81.0
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.3e-83 312.4 184 81.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.1e-83 312.0 184 79.9
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.1e-83 312.0 184 79.9
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 79.9
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 4.0e-83 311.6 182 83.0
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.2e-83 311.2 184 79.3
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.0e-82 309.3 184 82.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 3.4e-82 308.5 184 79.9
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 3.4e-82 308.5 183 79.8
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 5.8e-82 307.8 185 81.6
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 79.9
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.3e-81 306.6 184 81.5
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.3e-81 306.6 181 80.7
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.7e-81 306.2 182 80.8
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.7e-81 305.1 184 79.3
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 8.3e-81 303.9 180 80.0
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-80 303.5 182 78.0
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.1e-80 303.5 182 78.0
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.1e-80 303.5 181 80.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 78.0
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.1e-80 301.6 184 78.8
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.1e-80 301.6 184 79.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 9.2e-80 300.4 184 77.2
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.2e-80 300.4 182 79.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 9.2e-80 300.4 184 78.8
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 2.1e-79 299.3 184 77.2
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 4.6e-79 298.1 177 80.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 7.8e-79 297.4 184 77.7
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.0e-78 297.0 182 77.5
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.3e-78 296.6 184 78.3
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.7e-78 296.2 181 76.8
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 3.0e-78 295.4 184 77.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.0e-78 295.4 184 73.9
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.9e-78 295.0 177 77.4
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 3.9e-78 295.0 182 78.0
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.6e-78 294.3 182 76.9
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 77.2
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.1e-77 293.5 184 75.0
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.1e-77 293.5 184 76.1
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.5e-77 293.1 182 77.5
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.9e-77 292.7 182 78.0
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.9e-77 292.7 182 76.9
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.5e-77 292.4 182 77.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 7.3e-77 290.8 185 77.3
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 75.0
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 9.5e-77 290.4 178 76.4
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.6e-76 289.7 182 76.4
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.8e-76 288.9 184 74.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.6e-76 288.5 184 73.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 4.7e-76 288.1 183 77.0
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.7e-76 288.1 182 75.8
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 8.1e-76 287.3 178 78.1
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.1e-75 287.0 184 74.5
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.4e-75 286.6 183 76.0
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 74.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 3.1e-75 285.4 182 75.3
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 3.1e-75 285.4 182 75.3
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 3.1e-75 285.4 182 75.3
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.1e-75 285.4 184 74.5
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.1e-75 285.4 184 74.5
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 3.1e-75 285.4 182 72.0
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.1e-75 285.4 185 74.6
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.2e-74 283.5 177 75.7
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.0e-74 282.7 178 75.3
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.3e-73 280.0 193 73.6
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.6
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.6
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.7e-73 278.5 180 73.9
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 4.9e-73 278.1 184 71.7
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 4.9e-73 278.1 178 73.6
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.1e-72 276.9 185 74.6
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.1e-72 276.9 185 70.3
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.4e-72 276.6 178 74.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 70.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 71.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 7.1e-72 274.2 184 71.2
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 7.1e-72 274.2 178 73.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 9.2e-72 273.9 187 70.6
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 9.2e-72 273.9 179 72.1
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 9.2e-72 273.9 185 69.7
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 4.6e-71 271.6 177 76.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 6.0e-71 271.2 182 70.3
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 71.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.7e-70 269.6 177 70.6
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.7e-70 269.6 185 68.6
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.7e-70 269.6 170 76.5
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-69 266.9 184 68.5
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.1e-67 258.8 179 68.7
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.3e-65 253.4 184 68.5
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 3.8e-65 251.9 180 67.8
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.4e-64 250.0 177 67.8
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.9e-64 249.6 178 67.4
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 4.6e-63 245.0 178 65.7
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.0e-62 243.8 186 61.3
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 5.1e-62 241.5 165 75.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.9e-61 239.6 179 67.0
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.4e-56 222.6 182 63.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 3.2e-56 222.2 179 61.5
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.4e-56 221.5 115 94.8
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.7e-54 216.5 180 60.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 2.2e-49 199.5 184 57.1
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.4e-48 194.9 121 74.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 5.6e-45 184.9 197 51.3
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.9e-40 169.9 179 45.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 7.9e-39 164.5 159 52.2
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.2e-28 129.8 109 62.4
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.7e-28 129.0 99 65.7
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.5e-25 118.2 76 75.0
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 4.2e-16 89.0 164 32.3
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 4.7e-15 85.5 57 75.4
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 1.7e-12 77.0 59 62.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.8e-12 76.3 55 65.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.7e-09 67.0 41 80.5


User provided reference genes

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