Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.9e-133 479.2 243 100.0
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.2e-129 465.7 241 98.8
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 6.4e-129 464.2 243 97.9
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.1e-128 461.5 241 98.3
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 7.5e-114 414.1 214 98.6
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 3.2e-104 382.1 213 89.2
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.5e-72 276.2 215 66.0
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 7.9e-71 271.2 215 64.2
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 5.1e-70 268.5 206 64.6
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 6.7e-70 268.1 210 65.2
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 2.5e-69 266.2 223 61.4
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 5.7e-69 265.0 212 64.6
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 9.7e-69 264.2 251 57.4
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.8e-68 262.7 206 64.6
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 3.7e-68 262.3 206 65.0
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 4.8e-68 261.9 223 62.3
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 6.3e-68 261.5 211 63.0
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 6.3e-68 261.5 208 64.4
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.8e-67 260.0 215 60.9
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.8e-67 260.0 215 60.9
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.8e-67 260.0 215 60.9
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 3.1e-67 259.2 207 63.8
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 3.1e-67 259.2 223 61.0
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 5.3e-67 258.5 206 64.6
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.2e-66 257.3 240 59.2
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 2.0e-66 256.5 210 62.9
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 2.0e-66 256.5 218 60.1
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 3.4e-66 255.8 211 60.7
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 3.4e-66 255.8 211 60.7
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 5.9e-66 255.0 224 60.3
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 7.7e-66 254.6 211 60.2
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 7.7e-66 254.6 206 63.1
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.0e-65 254.2 207 62.8
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 1.7e-65 253.4 214 59.3
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 2.2e-65 253.1 210 60.0
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.2e-65 253.1 215 60.0
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.9e-65 252.7 223 59.2
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.8e-65 252.3 206 62.6
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 5.0e-65 251.9 206 65.0
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 6.5e-65 251.5 214 59.8
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.1e-64 250.8 206 65.0
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 1.4e-64 250.4 214 58.9
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.4e-64 250.4 214 60.3
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.5e-64 249.6 221 58.8
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 2.5e-64 249.6 230 59.1
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 4.2e-64 248.8 214 59.8
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 4.2e-64 248.8 222 58.6
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 5.5e-64 248.4 222 59.0
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 9.4e-64 247.7 218 58.7
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 2.7e-63 246.1 214 58.9
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 2.7e-63 246.1 228 58.3
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 2.7e-63 246.1 222 58.6
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 3.6e-63 245.7 207 63.3
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 3.6e-63 245.7 222 57.7
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 7.9e-63 244.6 222 58.6
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.0e-62 244.2 214 57.5
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 1.0e-62 244.2 218 58.3
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 1.4e-62 243.8 217 61.3
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 3.0e-62 242.7 206 60.2
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 3.9e-62 242.3 214 57.5
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 3.9e-62 242.3 214 57.5
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 3.9e-62 242.3 206 60.7
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.1e-62 241.9 221 57.5
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 8.8e-62 241.1 235 54.0
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.5e-61 240.4 206 59.7
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.5e-61 240.4 206 60.2
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 2.0e-61 240.0 217 57.6
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.3e-60 237.3 204 59.3
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 1.7e-60 236.9 195 62.6
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 4.8e-60 235.3 219 55.7
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 6.3e-60 235.0 206 58.7
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.1e-59 234.2 176 67.0
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 1.4e-59 233.8 211 55.9
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.8e-59 233.4 207 60.4
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.8e-59 233.4 195 60.5
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 3.1e-59 232.6 221 56.1
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 3.1e-59 232.6 214 57.0
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 6.9e-59 231.5 218 56.4
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 6.9e-59 231.5 203 58.6
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 1.2e-58 230.7 194 60.3
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.2e-58 230.7 214 56.5
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 2.0e-58 229.9 205 57.1
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 4.5e-58 228.8 238 51.7
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 4.5e-58 228.8 215 55.3
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 5.9e-58 228.4 226 52.7
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.7e-57 226.9 205 59.0
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.2e-57 226.5 250 52.4
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 3.8e-57 225.7 216 54.6
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 3.8e-57 225.7 216 53.7
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 5.0e-57 225.3 215 54.9
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 8.5e-57 224.6 227 52.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.4e-56 223.8 206 57.8
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 1.9e-56 223.4 214 55.1
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 3.2e-56 222.6 214 54.7
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 3.2e-56 222.6 218 52.8
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 2.7e-55 219.5 205 56.1
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.8e-54 216.9 207 54.1
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 8.8e-54 214.5 219 54.8
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 8.8e-54 214.5 221 51.6
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 8.8e-54 214.5 194 55.7
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 1.1e-53 214.2 175 64.6
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 3.3e-53 212.6 160 67.5
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 5.7e-53 211.8 158 67.1
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.7e-53 211.8 164 66.5
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 2.2e-52 209.9 163 64.4
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 6.3e-52 208.4 242 47.5
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.8e-51 206.8 205 52.2
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.0e-50 203.4 205 53.7
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 7.7e-50 201.4 206 51.5
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 3.8e-49 199.1 228 46.9
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 3.8e-49 199.1 154 63.0
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 3.8e-49 199.1 196 53.6
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.5e-48 197.2 158 63.3
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.9e-48 196.8 161 62.7
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 4.2e-48 195.7 212 50.0
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 3.9e-46 189.1 205 50.7
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 3.3e-45 186.0 219 48.4
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 6.5e-41 171.8 155 54.8
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.4e-38 164.1 162 48.8
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.3e-36 157.5 151 56.3
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 9.1e-35 151.4 111 68.5
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 5.9e-34 148.7 175 48.6
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 3.8e-33 146.0 130 57.7
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.0e-30 137.9 124 56.5
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.1e-27 126.3 189 42.3
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 2.3e-25 120.2 173 40.5
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 5.0e-25 119.0 220 35.0
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 2.2e-20 103.6 93 52.7
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 6.3e-20 102.1 90 52.2
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 2.4e-19 100.1 130 47.7
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 2.4e-19 100.1 147 44.2
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 3.5e-18 96.3 94 52.1
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 2.8e-07 60.1 48 54.2
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 6.2e-07 58.9 59 50.8
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 8.9e-06 55.1 173 27.2
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 8.9e-06 55.1 56 50.0


User provided reference genes

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