Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 2097.0 1076 100.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 2025.4 1076 96.6
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1945.6 1076 94.3
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1943.3 1076 94.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1942.2 1076 94.1
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1828.5 1080 88.1
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1644.8 1087 79.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1631.7 1084 79.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1610.1 1103 77.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1580.8 1098 76.7
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1552.3 1092 75.9
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1092 75.8
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1542.7 1095 75.3
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1541.6 1094 75.0
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1540.0 1097 74.6
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1538.1 1095 75.3
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1536.9 1088 74.9
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1535.8 1095 74.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1095 75.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1531.5 1089 74.8
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1526.5 1101 74.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1524.6 1095 74.2
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1096 74.1
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1089 74.1
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1520.4 1109 73.4
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1102 73.1
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1519.2 1093 73.6
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1517.3 1067 75.1
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1517.3 1109 73.3
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1516.5 1101 74.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1087 74.3
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1512.7 1085 73.6
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1106 72.4
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1511.9 1093 73.9
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1511.1 1124 71.9
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1511.1 1090 73.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1098 74.0
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1093 72.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1095 73.4
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1507.7 1093 72.9
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1507.3 1065 75.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1504.2 1088 73.3
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1501.9 1088 73.5
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1500.7 1091 73.2
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1500.0 1067 74.4
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1101 72.7
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1495.7 1082 73.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1494.9 1092 72.1
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1494.9 1104 72.6
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1089 71.9
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1488.0 1105 72.6
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1485.3 1093 71.7
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1479.5 1091 72.2
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1478.8 1089 71.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1478.0 1095 71.9
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1477.2 1096 72.1
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1476.1 1097 71.9
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1474.1 1092 72.1
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1472.6 1096 70.8
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1472.2 1096 70.5
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1472.2 1095 71.4
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1471.1 1116 71.1
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1470.7 1102 71.4
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1469.9 1128 70.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1469.5 1094 71.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1469.1 1100 71.7
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1468.4 1096 70.6
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1468.0 1096 71.4
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1466.4 1094 70.8
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1466.1 1097 71.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1464.5 1095 70.7
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1464.5 1095 70.7
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1461.8 1094 71.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1458.7 1086 71.7
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1458.4 1094 70.7
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1455.3 1083 71.0
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1453.7 1098 70.4
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1453.0 1096 70.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1451.8 1086 71.7
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1449.1 1082 70.8
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1448.3 1091 69.8
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1447.2 1095 70.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1444.5 1099 70.3
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1442.9 1092 69.9
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1441.8 1079 71.5
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1437.9 1087 71.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1436.8 1087 70.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1436.4 1100 69.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1436.4 1081 70.9
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1434.5 1100 69.6
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1434.5 1099 70.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1430.6 1073 70.2
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1419.4 1100 69.2
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1408.7 1083 68.5
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1402.5 1067 69.4
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1399.8 1085 67.7
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1388.6 1065 69.0
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1387.9 1196 64.0
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1380.5 1052 70.2
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1372.1 1062 67.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1362.8 1100 67.7
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1335.5 1067 66.6
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1314.3 1095 67.1
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1299.3 1089 65.7
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1292.3 969 70.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1255.7 999 66.0
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1233.4 1092 62.6
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1226.1 1067 63.7
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1204.5 1077 61.8
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1202.6 1072 60.0
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1202.6 1002 63.7
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1144.0 859 70.0
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 4.0e-308 1061.6 1067 54.1
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.8e-307 1057.0 1049 57.2
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 8.3e-306 1053.9 1060 55.4
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.8e-293 1012.3 798 68.8
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 1.2e-291 1006.9 1060 51.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-283 978.8 1001 55.9
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 5.4e-281 971.5 1071 50.8
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.1e-272 943.0 752 65.8
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 3.9e-271 938.7 752 65.7
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.5e-270 936.8 658 77.5
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-255 886.3 1072 49.3
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.0e-247 860.9 1074 48.8
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-246 855.9 1065 48.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.3e-245 854.0 663 68.2
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 8.5e-226 788.1 525 79.0
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.1e-225 787.7 597 70.5
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.6e-206 723.4 492 78.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-191 674.1 1076 42.7
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 4.9e-189 666.0 483 72.9
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.4e-172 611.3 424 75.5
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.2e-172 609.8 527 63.9
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 5.4e-172 609.4 1056 39.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.4e-159 568.2 557 54.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.1e-159 567.0 445 67.6
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 6.4e-157 559.3 1103 34.9
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.2e-156 557.0 454 63.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.6e-152 544.7 557 55.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-144 518.1 375 71.7
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-143 515.4 369 72.4
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-143 515.4 369 72.4
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.3e-138 498.4 419 61.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-133 481.1 418 64.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 3.9e-130 470.3 537 53.1
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.7e-128 464.9 363 66.7
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 3.7e-128 463.8 655 43.4
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.2e-115 422.2 1123 30.7
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-113 415.6 635 42.8
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 7.2e-108 396.4 289 72.0
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.6e-94 352.1 294 62.2
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.8e-89 332.8 508 43.1
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 8.9e-82 309.7 199 78.9
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 6.4e-80 303.5 523 35.9
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 8.0e-75 286.6 285 55.4
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.0e-73 282.0 400 44.2
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-68 263.8 235 63.0
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-66 257.3 291 50.2
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-62 245.4 226 62.8
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 4.6e-62 244.2 184 70.1
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-61 242.7 465 40.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.3e-53 216.1 140 78.6
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 2.2e-48 198.7 125 81.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 5.1e-45 187.6 172 62.2
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-42 179.1 128 71.1
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 2.6e-41 175.3 156 62.2
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.0e-37 163.3 138 60.9
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.8e-37 162.5 238 39.9
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.1e-34 151.8 172 53.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.2e-30 139.8 292 36.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 4.6e-30 137.9 209 40.2
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.3e-24 119.8 92 66.3
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 5.5e-23 114.4 263 34.6
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.2e-19 102.4 96 60.4
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 6.1e-14 84.3 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 3.0e-13 82.0 83 53.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 8.8e-13 80.5 72 51.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.5e-09 69.7 115 37.4


User provided reference genes

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