Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 0.0e+00 1286.6 631 100.0
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 0.0e+00 1199.9 593 99.0
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 0.0e+00 1127.9 584 95.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-295 1018.1 511 97.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 4.1e-295 1017.7 511 97.5
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 9.3e-271 936.8 511 88.8
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 3.4e-188 662.5 536 61.2
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 5.6e-175 618.6 542 58.7
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 3.9e-160 569.3 530 55.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 5.1e-160 568.9 527 56.2
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 1.3e-155 554.3 530 55.1
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 2.2e-155 553.5 521 55.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.9e-155 553.1 527 55.0
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.2e-154 549.7 521 54.5
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.3e-152 543.5 529 53.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 8.7e-152 541.6 527 53.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 2.5e-151 540.0 521 51.1
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.3e-150 537.7 532 52.3
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.8e-150 536.6 519 50.5
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.6e-150 536.2 525 53.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 8.1e-150 535.0 529 53.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.4e-149 534.3 520 51.5
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 5.3e-149 532.3 528 54.5
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.3e-149 532.3 523 54.1
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.6e-148 530.0 532 52.6
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 4.9e-147 525.8 525 52.4
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 8.4e-147 525.0 522 52.3
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.1e-146 524.6 522 50.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.4e-146 524.2 520 50.2
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.1e-145 520.4 527 50.7
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 4.6e-145 519.2 518 49.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.3e-144 517.7 520 50.2
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 5.1e-144 515.8 525 50.3
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.9e-143 513.8 524 49.4
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.8e-142 510.0 528 50.2
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.4e-141 507.7 524 51.0
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.1e-141 506.5 526 50.0
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 5.3e-141 505.8 527 50.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.5e-140 504.2 526 49.8
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.0e-140 503.8 527 49.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.0e-140 503.8 522 49.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.4e-140 503.1 526 49.4
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.8e-140 502.3 516 51.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.2e-139 500.4 527 48.4
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.1e-138 498.0 531 50.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.2e-138 496.1 533 47.5
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.1e-138 495.4 534 47.6
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 7.1e-138 495.4 526 50.4
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 9.3e-138 495.0 511 51.7
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.2e-137 494.6 523 51.2
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 3.5e-137 493.0 523 51.1
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 4.6e-137 492.7 523 49.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 4.6e-137 492.7 526 52.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 7.9e-137 491.9 524 48.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 7.9e-137 491.9 524 50.8
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.8e-136 490.7 523 49.7
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.8e-136 490.7 529 49.5
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-135 488.0 534 46.8
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 2.5e-135 486.9 538 47.2
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 7.4e-135 485.3 527 49.3
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.3e-134 484.6 524 49.4
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-134 483.4 304 81.2
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.4e-133 481.1 514 47.3
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 6.9e-133 478.8 516 48.1
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.2e-131 473.8 528 47.3
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.9e-131 473.4 551 45.9
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.5e-130 470.3 526 49.0
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 2.1e-129 467.2 537 47.5
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 8.7e-128 461.8 439 54.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 4.3e-127 459.5 516 46.5
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 7.4e-127 458.8 525 46.5
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.8e-125 454.1 519 48.0
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 3.1e-125 453.4 517 47.0
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 2.0e-124 450.7 529 46.7
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.8e-123 446.4 546 46.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 8.5e-123 445.3 546 47.1
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.4e-122 444.5 527 45.9
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-121 441.0 535 45.4
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.8e-120 437.6 444 51.6
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.5e-119 433.7 534 44.9
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 2.8e-118 430.3 522 44.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.7e-118 429.9 531 44.8
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.9e-114 417.5 533 45.8
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.7e-113 413.7 530 44.0
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.7e-113 413.7 534 42.7
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.8e-112 411.0 530 40.9
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.3e-112 410.6 530 40.8
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.5e-111 407.9 515 42.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 3.3e-111 406.8 528 43.8
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.2e-110 404.1 515 42.1
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 3.1e-109 400.2 514 42.0
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 3.1e-109 400.2 514 42.0
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 3.1e-109 400.2 514 42.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 7.2e-106 389.0 519 41.8
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.8e-104 384.4 429 47.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 5.2e-104 382.9 523 40.3
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.3e-101 372.9 515 41.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.7e-100 370.5 569 39.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 5.9e-100 369.4 520 40.8
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 7.7e-100 369.0 415 50.4
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.9e-98 364.4 587 38.5
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 4.2e-98 363.2 542 38.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.0e-88 330.5 538 38.1
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.9e-83 313.9 310 52.3
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 5.0e-83 313.2 467 39.4
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 5.2e-80 303.1 497 37.2
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.3e-78 295.8 573 35.3
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.2e-77 293.9 325 51.1
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 3.5e-76 290.4 287 52.3
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.1e-72 277.3 608 30.9
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.0e-67 260.0 310 47.1
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 4.0e-64 250.4 323 46.1
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 9.8e-63 245.7 409 37.2
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.6e-60 238.4 560 31.1
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.0e-59 235.7 225 49.3
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.3e-58 230.3 178 66.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.6e-58 229.9 175 66.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 3.8e-54 217.2 550 28.9
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.4e-46 189.5 100 86.0
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-44 185.3 200 45.5
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-43 182.2 379 32.2
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.1e-42 179.1 98 87.8
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 9.6e-42 176.0 525 27.2
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 2.1e-41 174.9 573 29.3
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 6.2e-41 173.3 282 38.3
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.6e-33 147.5 89 84.3
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 8.1e-33 146.4 356 30.6
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.4e-31 141.0 153 54.2
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 2.2e-30 138.3 197 39.1
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 7.4e-26 123.2 105 53.3
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 2.8e-25 121.3 110 55.5
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 6.2e-25 120.2 119 53.8
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.5e-22 110.2 61 85.2
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-18 97.8 133 42.9
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-15 89.4 191 30.9
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.3e-14 85.9 209 29.7
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.7e-14 85.5 188 31.9
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.9e-13 82.0 135 38.5
FAN14G3621 Fragaria x ananassa HOM05D009519 ORTHO05D010307 4.2e-13 80.9 42 88.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.5e-13 80.5 70 60.0
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-12 79.3 53 77.4
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.3e-09 69.3 56 53.6
FvH4_1g21980 Fragaria vesca HOM05D000422 ORTHO05D006102 1.4e-08 65.9 42 73.8
FAN05G2153 Fragaria x ananassa HOM05D000588 ORTHO05D010307 1.8e-08 65.5 29 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 2.4e-08 65.1 285 23.5
RcHm_v2.0_Chr5g0069651 Rosa chinensis HOM05D021378 ORTHO05D000090 4.1e-08 64.3 56 60.7
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-08 63.9 103 33.0
FAN25G0986 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.3e-08 63.9 36 88.9
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 5.3e-08 63.9 181 24.3
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.5e-07 62.4 100 36.0
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 2.6e-07 61.6 159 30.2
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 3.4e-07 61.2 263 22.8
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 3.4e-07 61.2 263 22.1
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.5e-07 60.8 62 45.2
Haze_03424 Corylus avellana HOM05D000027 ORTHO05D000500 5.9e-07 60.5 148 28.4
Dinv44640 Davidia involucrata HOM05D010002 ORTHO05D016273 7.7e-07 60.1 90 33.3
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 7.7e-07 60.1 260 23.5
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 1.0e-06 59.7 149 29.5
RcHm_v2.0_Chr5g0074231 Rosa chinensis HOM05D009519 ORTHO05D010307 1.0e-06 59.7 71 40.8
AUR62043158 Chenopodium quinoa HOM05D007145 ORTHO05D008952 5.0e-06 57.4 95 32.6
BolC4t24488H Brassica oleracea HOM05D031115 ORTHO05D020197 6.5e-06 57.0 100 36.0
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 8.5e-06 56.6 71 39.4


User provided reference genes

Program Settings