Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.2e-191 672.2 346 100.0
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.4e-184 648.3 349 96.8
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.4e-147 524.2 434 68.9
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 7.4e-147 524.2 435 68.3
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.2e-142 508.8 434 67.5
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.3e-140 503.4 382 73.3
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.0e-137 490.7 399 70.9
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.5e-135 484.6 533 56.3
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.3e-132 476.1 285 89.5
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.0e-124 450.7 433 60.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.4e-116 423.7 432 57.2
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.7e-114 416.8 435 54.5
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.3e-111 407.1 435 53.8
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 3.8e-111 405.6 435 54.0
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.4e-108 397.1 435 52.2
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 4.0e-108 395.6 435 52.4
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.7e-106 390.2 435 52.6
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.8e-106 388.7 435 51.7
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 8.8e-100 367.9 441 50.8
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 3.4e-99 365.9 262 74.8
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 3.7e-98 362.5 441 49.2
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.1e-97 360.9 409 50.4
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.1e-97 359.4 404 52.5
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.1e-97 359.0 441 49.2
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.0e-95 354.4 442 48.6
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 9.5e-94 347.8 459 47.3
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 9.5e-94 347.8 435 47.1
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.2e-93 347.4 441 48.3
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 2.8e-93 346.3 437 47.6
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.4e-92 344.0 443 48.3
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.4e-92 344.0 435 46.7
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 6.8e-92 341.7 441 48.5
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.2e-91 340.9 437 47.4
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.5e-91 340.5 441 47.4
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.5e-91 340.5 434 45.9
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.7e-90 335.9 441 47.4
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 4.9e-90 335.5 441 47.8
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 2.4e-89 333.2 435 46.2
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 4.1e-89 332.4 464 44.6
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.6e-88 330.5 438 46.3
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 9.5e-86 321.2 441 45.1
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.2e-85 320.9 443 45.4
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 1.2e-85 320.9 441 44.9
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.8e-84 317.0 443 44.0
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.0e-84 315.8 519 41.4
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 8.9e-84 314.7 439 43.5
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.2e-83 314.3 440 44.8
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.2e-83 314.3 518 41.3
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.0e-83 313.5 440 45.2
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.4e-83 312.4 441 43.5
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.2e-82 310.1 435 43.9
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.9e-82 309.7 442 45.2
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 3.7e-82 309.3 435 44.4
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.1e-81 307.8 432 44.7
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.1e-81 307.8 412 47.1
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.9e-81 307.0 405 46.9
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 4.1e-81 305.8 440 44.1
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 7.0e-81 305.1 444 44.1
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 7.0e-81 305.1 440 43.4
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.2e-80 304.3 438 43.2
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.2e-80 304.3 440 44.1
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.2e-80 304.3 440 44.1
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.2e-80 304.3 440 44.1
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.2e-80 304.3 441 43.5
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 2.0e-80 303.5 441 43.8
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.5e-80 302.8 440 43.9
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 7.8e-80 301.6 440 43.4
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.3e-79 300.8 440 43.6
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 2.3e-79 300.1 441 42.2
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 3.9e-79 299.3 440 43.4
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 6.6e-79 298.5 440 44.3
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 6.6e-79 298.5 459 42.7
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.5e-78 297.4 420 45.7
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.9e-78 297.0 418 45.9
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.3e-78 296.2 422 45.5
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 3.3e-78 296.2 384 47.4
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 4.3e-78 295.8 442 42.1
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 4.3e-78 295.8 440 43.0
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.6e-78 295.4 440 43.2
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 9.5e-78 294.7 440 43.2
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 9.5e-78 294.7 440 43.2
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.6e-77 293.9 440 43.4
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.6e-77 293.9 441 43.5
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.1e-76 291.2 438 43.2
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 6.8e-76 288.5 381 47.0
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.2e-75 287.7 414 44.0
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.5e-75 287.3 441 42.0
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.0e-75 287.0 441 41.7
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.6e-75 286.6 430 43.0
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.4e-75 286.2 441 42.4
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 3.4e-75 286.2 444 42.8
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.4e-75 286.2 441 42.0
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 7.5e-75 285.0 375 45.9
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.7e-74 283.9 449 43.0
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 8.3e-74 281.6 449 42.8
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.9e-73 280.4 441 41.3
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 5.4e-73 278.9 436 41.3
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 7.0e-73 278.5 441 41.0
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.1e-72 276.9 441 41.0
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 7.8e-72 275.0 351 47.6
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 5.1e-71 272.3 414 43.5
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.5e-70 270.0 440 39.3
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.3e-70 269.2 435 40.9
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 5.6e-70 268.9 343 50.7
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 2.8e-69 266.5 226 63.3
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 8.1e-69 265.0 440 42.0
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.1e-68 264.6 293 52.9
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 4.4e-67 259.2 435 40.0
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.9e-66 255.8 340 50.0
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.4e-65 253.4 440 40.7
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.6e-64 250.8 368 42.9
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.1e-64 250.4 315 47.9
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 4.6e-64 249.2 362 45.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 6.0e-64 248.8 440 38.4
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 5.6e-62 242.3 269 51.7
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 8.1e-61 238.4 336 43.8
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 3.1e-60 236.5 336 46.4
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 4.9e-58 229.2 541 34.6
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.0e-55 221.5 220 54.1
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.1e-53 211.8 220 53.2
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 2.4e-52 210.3 426 36.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 3.1e-52 209.9 442 33.5
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.3e-50 204.5 514 33.5
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.9e-50 202.6 230 50.0
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 5.1e-47 192.6 183 60.1
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 6.2e-45 185.7 380 32.9
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 6.9e-44 182.2 377 34.0
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 5.4e-41 172.6 411 35.3
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 7.9e-40 168.7 431 33.2
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 8.7e-39 165.2 288 41.7
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.1e-38 164.9 292 39.0
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.9e-38 164.1 203 46.8
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 7.4e-38 162.2 308 42.9
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.3e-37 161.4 278 41.7
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 8.1e-37 158.7 141 67.4
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.0e-36 156.4 153 54.2
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 4.5e-35 152.9 318 35.8
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 7.9e-32 142.1 270 35.2
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-28 130.2 202 37.1
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.5e-27 127.9 194 44.3
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.6e-27 127.1 387 31.3
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 4.5e-27 126.3 194 44.3
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.1e-24 117.5 398 27.1
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-23 114.8 163 44.2
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.7e-23 112.5 73 72.6
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 7.4e-22 109.0 92 58.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 7.4e-22 109.0 92 58.7
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.8e-21 106.3 194 40.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.3e-21 105.9 170 39.4
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.8e-20 104.4 72 66.7
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 3.4e-19 100.1 189 37.0
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-16 91.7 61 68.9
FAN05G5087 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-13 81.6 57 71.9
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 6.9e-12 75.9 149 36.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 5.9e-11 72.8 120 38.3
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 3.6e-08 63.5 125 33.6
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.1e-08 62.8 41 70.7
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.3e-07 60.8 205 31.7
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 3.9e-07 60.1 85 42.4
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 5.7e-06 56.2 149 33.6


User provided reference genes

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