Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 0.0e+00 1212.6 600 100.0
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 0.0e+00 1191.4 605 98.3
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 0.0e+00 1146.0 604 95.4
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 0.0e+00 1144.0 609 94.6
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 0.0e+00 1121.7 609 92.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 5.7e-304 1047.0 626 83.9
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 6.3e-303 1043.5 619 83.8
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 595 83.9
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.6e-293 1011.5 576 85.6
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 4.5e-293 1010.7 604 81.5
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.2e-292 1008.4 576 85.1
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 5.0e-292 1007.3 567 86.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 8.5e-292 1006.5 615 81.0
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 576 84.7
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.4e-291 1005.7 575 84.7
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.2e-291 1004.6 629 80.0
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.2e-291 1004.6 614 80.6
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 5.5e-291 1003.8 615 80.0
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 5.5e-291 1003.8 600 80.8
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.2e-291 1003.4 606 81.4
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.2e-291 1003.4 603 81.9
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 612 81.5
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 602 81.4
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 600 82.3
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.7e-290 1001.5 620 79.7
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 621 80.4
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 619 80.1
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 598 82.4
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 610 81.8
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.0e-289 999.6 619 80.1
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.4e-289 999.2 612 80.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.8e-289 998.8 617 80.7
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 3.9e-289 997.7 616 80.2
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.9e-289 997.7 614 79.0
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.9e-289 997.7 612 79.9
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 5.2e-289 997.3 616 79.7
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.2e-289 997.3 617 79.4
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 5.2e-289 997.3 612 79.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.1e-288 996.1 558 86.2
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.5e-288 995.7 609 80.8
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 3.3e-288 994.6 615 79.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.2e-287 991.9 628 78.3
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.2e-287 991.9 607 80.9
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.8e-287 991.5 602 79.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.8e-287 991.5 602 79.7
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.8e-287 991.5 603 80.4
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.8e-287 991.5 622 78.6
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.8e-287 991.5 607 80.9
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.7e-287 991.1 558 85.8
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.7e-287 991.1 580 82.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 6.3e-287 990.3 605 80.5
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.1e-286 989.6 558 86.0
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.1e-286 989.6 609 80.5
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.1e-286 989.6 612 80.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.4e-286 988.4 601 80.7
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 5.3e-286 987.3 605 80.2
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.2e-285 986.1 558 84.8
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.2e-285 986.1 558 84.6
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 3.5e-285 984.6 602 80.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.5e-285 984.6 570 83.5
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.7e-285 983.4 611 80.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.7e-285 983.4 570 83.3
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.0e-284 983.0 570 83.5
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-284 983.0 570 83.3
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.3e-284 982.6 570 83.5
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 2.2e-284 981.9 561 84.7
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 5.0e-284 980.7 561 84.7
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 8.5e-284 979.9 606 80.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.1e-283 979.5 610 79.7
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.1e-283 979.5 606 79.7
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.1e-283 979.5 566 83.7
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.9e-283 978.8 612 79.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 2.5e-283 978.4 563 83.8
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 2.5e-283 978.4 570 82.8
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.5e-283 978.4 607 79.7
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 7.2e-283 976.9 590 81.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 7.2e-283 976.9 566 83.4
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 9.4e-283 976.5 561 83.6
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.6e-282 975.7 575 82.6
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 4.7e-282 974.2 578 82.2
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 4.7e-282 974.2 614 78.3
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.0e-281 973.0 570 82.5
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.0e-281 973.0 574 82.9
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.0e-281 973.0 561 84.1
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.4e-281 972.6 636 77.2
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.8e-281 972.2 617 78.3
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.8e-281 972.2 617 78.3
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.3e-281 971.8 566 82.9
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.3e-281 971.8 570 83.2
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 3.0e-281 971.5 590 80.7
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 3.0e-281 971.5 590 80.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 5.2e-281 970.7 590 80.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 5.2e-281 970.7 558 84.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 5.2e-281 970.7 558 84.2
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.5e-280 969.1 558 84.2
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.0e-280 968.8 581 81.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 4.4e-280 967.6 563 82.9
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 9.7e-280 966.5 558 84.4
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 9.7e-280 966.5 647 74.0
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 2.2e-279 965.3 590 80.2
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.4e-278 962.6 631 76.5
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.8e-278 962.2 590 79.8
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.0e-277 958.7 606 78.4
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.1e-275 953.0 579 80.1
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.2e-275 951.4 680 72.2
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.2e-275 951.0 627 76.4
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.7e-274 948.3 620 76.1
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 6.8e-273 943.7 642 74.0
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.2e-272 943.0 527 86.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.0e-270 933.7 637 73.0
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 8.6e-268 926.8 541 81.7
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.2e-267 924.9 568 78.5
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 7.5e-264 913.7 560 77.3
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.4e-262 908.7 506 87.0
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.5e-261 904.8 610 74.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.8e-257 892.5 618 71.4
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 4.9e-255 884.4 583 72.6
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.9e-255 884.4 629 72.7
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.0e-252 876.7 539 79.6
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.1e-249 865.1 527 78.9
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.7e-247 859.4 624 71.6
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 9.2e-246 853.6 581 72.6
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.4e-240 834.7 562 74.7
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.0e-236 822.0 569 69.2
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.4e-233 813.1 557 70.2
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.1e-225 786.9 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.2e-221 773.5 460 80.2
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 6.0e-221 771.2 490 77.8
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 1.6e-218 763.1 550 66.7
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.3e-217 758.1 433 84.1
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.2e-215 752.7 481 77.5
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.0e-212 742.3 426 84.0
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.4e-207 724.5 490 74.3
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 4.6e-205 718.4 433 78.8
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.0e-201 704.1 420 80.7
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.6e-200 702.6 561 60.6
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.1e-188 661.8 403 80.1
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 8.0e-173 611.3 433 71.8
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.9e-167 592.8 579 53.0
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.3e-154 548.5 312 86.2
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 4.1e-145 519.2 384 70.3
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 9.5e-126 454.9 339 71.4
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.8e-116 424.1 286 74.1
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-104 384.4 277 67.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 2.0e-91 340.9 216 75.0
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 7.4e-78 295.8 207 74.4
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 9.7e-78 295.4 557 34.5
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.7e-77 293.5 186 80.1
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.8e-69 267.3 150 83.3
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 9.7e-62 242.3 131 87.8
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.3e-58 231.9 133 79.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 4.4e-54 216.9 126 81.0
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 5.9e-51 206.5 114 83.3
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 5.9e-51 206.5 116 88.8
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.3e-50 205.3 178 62.4
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 2.2e-50 204.5 115 80.9
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 5.5e-49 199.9 109 86.2
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.4e-46 190.3 105 83.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.7e-46 189.9 115 78.3
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 9.8e-46 189.1 125 73.6
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.8e-39 168.3 108 79.6
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 6.8e-39 166.4 107 73.8
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.3e-37 162.2 210 47.1
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 9.1e-36 156.0 111 72.1
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.3e-26 125.6 116 59.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.0e-26 123.6 61 93.4
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 4.7e-24 117.1 70 71.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.0e-22 111.7 211 35.1
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.4e-20 104.8 56 85.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 9.5e-17 92.8 182 31.9
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.0e-14 85.1 67 59.7
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.4e-14 84.0 65 67.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 4.3e-09 67.4 85 51.8


User provided reference genes

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