Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2610.5 1323 100.0
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2593.5 1323 99.4
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 2593.1 1323 99.4
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2580.1 1323 98.6
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2565.8 1323 98.1
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2422.1 1323 92.7
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2418.3 1241 98.7
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 2169.0 1323 82.6
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2106.3 1329 80.4
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2072.7 1326 78.7
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1916.7 1328 73.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1901.7 1328 72.8
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1894.0 1325 73.0
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1860.1 1328 70.9
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1844.3 1331 71.3
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1832.8 1331 71.0
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1832.8 1330 70.2
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1832.4 1333 70.8
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1820.4 1332 70.4
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1809.3 1329 70.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1803.5 1328 69.3
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1800.8 1333 68.9
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1800.8 1328 69.0
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1779.6 1335 67.9
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1774.2 1335 67.5
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1771.1 1249 73.1
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1771.1 1329 68.8
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1760.0 1246 72.2
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1752.3 1326 67.5
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1742.6 1331 66.5
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1737.2 1329 66.3
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1733.0 1327 65.8
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1727.2 1325 66.2
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1726.5 1322 66.9
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1708.7 1329 65.3
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1706.0 1330 65.6
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1705.6 1278 67.8
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1704.9 1324 65.6
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1699.9 1326 66.0
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1691.0 1328 64.9
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1681.0 1270 67.2
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1673.7 1324 64.0
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1667.9 1330 64.2
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1667.1 1327 64.2
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1666.4 1326 64.3
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1665.2 1325 64.3
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1660.2 1326 64.0
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1658.7 1279 65.3
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1654.4 1340 62.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1652.1 1323 65.4
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1644.8 1344 63.6
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1351 62.9
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1643.6 1339 62.5
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1639.0 1324 63.4
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1638.6 1324 64.1
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1631.7 1331 63.1
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1630.2 1333 62.5
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1625.1 1328 62.2
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1616.7 1332 61.8
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1616.3 1334 62.4
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1615.5 1240 65.6
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1605.9 1096 74.7
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1605.1 1266 63.5
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1604.3 1345 61.7
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1597.0 1345 61.1
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1587.0 1333 61.0
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1575.1 1336 60.9
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1572.8 1332 61.0
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1572.4 1331 61.2
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1570.1 1333 61.0
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1570.1 1100 71.4
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1568.9 1332 60.9
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1568.5 1336 60.8
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1568.1 1330 60.8
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1567.7 1337 60.7
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1553.9 1330 60.8
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1552.7 1332 60.0
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1540.4 1365 58.8
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1525.8 1325 58.9
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1516.5 1330 59.8
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1502.3 1286 62.4
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1501.5 1194 63.1
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1500.0 1127 66.3
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1496.5 1327 59.6
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1487.6 1328 59.2
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1486.9 1109 66.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1484.2 1327 58.7
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1456.0 1091 67.6
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1409.4 1339 54.0
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1399.4 1167 61.2
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1391.3 1559 49.9
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1377.1 1326 57.9
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1360.1 1323 53.5
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1340.1 1350 53.0
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1330.1 1332 53.7
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1322.4 945 70.3
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1190.3 909 66.8
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1168.7 864 69.3
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1161.0 1332 49.8
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1087.4 1282 47.7
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1077.4 756 72.5
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 4.0e-249 865.9 1364 37.4
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 8.3e-231 805.1 858 49.2
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.4e-230 803.5 1187 40.3
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 3.3e-227 793.1 1195 38.7
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.7e-223 780.8 1302 37.0
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.8e-209 734.2 809 51.3
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 2.3e-156 557.8 1619 29.4
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 2.7e-141 507.7 358 71.8
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 5.9e-136 490.0 459 56.6
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 6.3e-130 469.9 379 61.7
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 4.3e-94 350.9 1496 26.1
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.6e-88 332.4 1560 26.5
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 1.4e-81 309.3 302 54.3
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 7.1e-81 307.0 255 55.7
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.2e-77 296.2 317 53.0
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.5e-67 261.2 196 71.4
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.5e-59 236.1 233 53.2
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.9e-57 229.2 1236 24.5
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.1e-56 225.7 223 54.3
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 3.0e-55 221.9 167 71.9
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 2.1e-48 199.1 1359 24.4
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 5.5e-41 174.5 130 68.5
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.5e-38 166.4 289 42.6
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 9.7e-38 163.7 121 68.6
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 5.7e-30 137.9 139 56.8


User provided reference genes

Program Settings