Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 2064.3 1053 100.0
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 2016.1 1053 97.6
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1992.2 1066 96.1
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1928.3 1074 92.5
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1778.1 1077 84.2
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1662.5 1073 78.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1650.2 1070 78.4
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1648.3 1074 77.7
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1647.5 1076 78.4
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1647.5 1078 78.4
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1644.8 1081 77.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1641.7 948 86.5
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1640.6 1072 78.9
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1637.5 1075 77.3
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1633.6 1075 78.0
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1629.0 868 96.4
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1620.9 1117 75.5
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1616.7 1074 76.6
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1615.1 1069 76.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1615.1 1073 76.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1612.4 1073 76.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1610.9 1073 77.2
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1597.8 1085 75.4
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1586.2 1075 74.4
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1585.5 1073 74.9
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1573.9 1069 75.2
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1568.5 1072 73.9
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1072 74.2
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1565.1 1072 73.5
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1563.9 1004 77.2
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1559.7 1083 74.2
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1557.3 1068 75.1
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1556.2 1073 73.0
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1553.9 1079 73.2
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1553.9 1076 74.0
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1551.2 1088 72.8
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1550.0 1082 74.2
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1537.3 1076 72.6
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1532.3 1077 72.7
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1528.5 1066 72.9
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1528.5 1069 72.6
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1526.1 1085 71.6
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1523.5 1071 72.2
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1522.7 1068 72.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1522.3 1078 71.3
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1520.4 1078 71.7
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1519.2 1068 72.7
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1518.8 1076 71.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1512.7 1074 73.3
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1502.3 1079 72.6
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1496.5 1127 68.9
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1495.3 1067 71.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1493.4 1078 70.9
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1493.4 1098 70.5
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1492.2 1066 71.2
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1482.2 971 76.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1480.3 1089 70.5
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1479.9 1072 71.8
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1478.0 1072 71.7
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1476.5 1065 71.0
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1474.1 1071 71.5
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1471.4 1072 71.5
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1469.9 1113 68.8
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1159 66.8
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1456.4 1073 71.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1453.0 947 76.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1451.8 1074 70.2
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1448.0 1225 63.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1442.2 988 72.4
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1425.6 948 77.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1417.1 965 74.0
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1386.7 1059 66.9
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1385.5 1095 66.9
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1380.5 1029 67.4
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1366.7 1080 65.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1346.3 978 69.4
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1311.6 1074 66.0
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1305.0 881 75.5
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1298.9 978 66.4
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1283.1 1190 59.2
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1259.2 1106 61.1
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1245.3 1033 61.9
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1244.6 1063 60.1
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1232.6 1073 60.3
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1201.0 954 66.8
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1119.4 1049 54.3
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1083.9 1140 53.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 6.0e-309 1064.3 671 79.4
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.8e-298 1028.9 1023 53.6
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 4.8e-290 1001.5 989 55.3
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 7.7e-288 994.2 751 67.6
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.1e-285 986.1 1095 52.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 2.4e-281 972.6 1071 50.8
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 2.0e-275 953.0 1060 49.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.0e-267 926.4 593 79.1
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 8.8e-260 901.0 614 74.4
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 5.2e-220 768.8 499 78.8
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.5e-211 740.7 584 64.4
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 9.3e-201 704.9 622 62.1
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 1.7e-194 684.1 518 69.3
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.2e-192 677.9 470 72.3
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.9e-191 672.9 817 51.0
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 3.5e-176 623.2 384 83.3
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.1e-172 611.7 623 57.5
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.2e-170 604.0 459 68.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.4e-167 594.7 397 75.1
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.9e-167 593.2 305 97.0
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.7e-162 577.8 410 72.2
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.7e-152 543.1 362 78.7
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 3.7e-133 480.3 328 73.5
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.5e-129 467.6 379 65.2
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.8e-128 464.2 337 74.2
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.0e-114 419.1 285 74.7
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.7e-114 418.3 294 69.7
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.6e-112 410.6 818 37.8
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.0e-102 378.3 197 88.8
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.0e-87 327.4 241 70.1
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.3e-81 307.4 221 71.9
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 5.6e-81 307.0 291 49.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 6.3e-64 250.4 170 79.4
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.9e-57 228.8 119 100.0
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.9e-57 228.8 119 100.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 4.2e-52 211.1 174 63.2
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.7e-51 208.4 187 65.2
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.5e-49 202.6 142 73.2
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.2e-44 183.7 150 60.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.6e-35 156.0 146 56.8
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-35 155.6 112 69.6
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.8e-34 152.5 124 58.9
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.8e-34 152.5 127 56.7
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 4.0e-34 151.4 100 74.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.0e-33 149.1 105 71.4
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 6.3e-32 144.1 103 64.1
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 3.1e-31 141.7 203 41.9
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 5.0e-29 134.4 83 79.5
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.9e-28 132.5 90 68.9
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-28 132.1 88 71.6
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 1.8e-23 115.9 121 51.2
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.2e-22 113.2 75 70.7
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 7.7e-22 110.5 92 65.2
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 2.8e-19 102.1 180 38.3
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.8e-19 102.1 132 44.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-18 99.4 67 76.1
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 5.4e-15 87.8 109 50.5
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 5.0e-13 81.3 54 68.5
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.6e-12 77.8 56 66.1
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 5.6e-12 77.8 55 69.1
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 3.4e-09 68.6 46 69.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 3.4e-09 68.6 46 69.6
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 3.4e-09 68.6 46 69.6
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 5.7e-09 67.8 46 69.6
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 5.7e-09 67.8 59 59.3
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 2.9e-08 65.5 46 67.4
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 4.9e-08 64.7 46 65.2
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 2.4e-07 62.4 45 62.2
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 3.2e-07 62.0 37 75.7
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 5.4e-07 61.2 55 56.4
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 1.2e-06 60.1 45 57.8


User provided reference genes

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