Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.8e-82 308.5 155 100.0
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.3e-82 307.4 155 99.4
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 3.1e-81 305.1 155 98.1
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.4e-81 304.3 155 98.7
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.3e-79 299.7 155 96.8
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.2e-73 278.5 155 91.6
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 83.2
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 83.9
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 4.9e-66 254.6 147 83.7
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 79.4
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 79.4
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 78.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 76.1
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 76.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 76.1
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 77.4
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 76.1
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 5.1e-63 244.6 154 76.6
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 8.6e-63 243.8 155 74.2
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 76.1
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 74.8
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 72.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 74.2
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 74.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 71.6
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 71.6
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 76.8
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 71.0
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 74.8
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 74.2
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 72.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 74.8
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 71.6
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 72.3
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.9
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 71.6
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 73.5
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 71.0
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 75.5
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 72.9
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 72.3
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 73.5
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 72.3
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 74.2
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 72.9
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 69.7
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 70.3
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 72.3
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 71.0
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 72.3
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 68.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 69.0
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 69.7
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 72.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.7e-58 228.4 155 70.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.1e-57 226.9 155 69.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 71.6
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 71.6
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 69.7
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 67.7
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 68.4
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 4.1e-57 224.9 152 71.1
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 71.0
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 69.0
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 71.6
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.2e-56 223.4 155 69.7
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 71.0
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 68.4
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 71.0
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.1e-56 222.6 156 69.9
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.1e-56 222.6 156 69.9
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 68.4
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 68.4
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 67.7
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 7.8e-56 220.7 155 67.1
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.0e-55 220.3 155 67.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 69.0
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 69.7
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 5.1e-55 218.0 155 69.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 67.7
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 8.6e-55 217.2 147 72.8
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.1e-54 216.9 153 68.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.5e-54 216.5 155 69.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.5e-54 216.5 152 68.4
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.5e-54 216.5 174 63.2
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 2.5e-54 215.7 152 67.1
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.5e-54 215.7 150 67.3
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 9.5e-54 213.8 155 66.5
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 6.2e-53 211.1 145 68.3
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.4e-52 209.1 155 63.2
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 6.8e-52 207.6 154 64.3
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.2e-51 206.8 150 71.3
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.6e-51 205.7 132 72.0
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.6e-51 205.7 145 67.6
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 9.9e-51 203.8 153 62.7
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.3e-50 203.4 141 68.1
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.2e-50 202.6 156 64.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.8e-50 201.8 150 69.3
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.9e-49 199.5 156 63.5
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.9e-49 199.5 127 72.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.4e-49 199.1 156 62.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 7.1e-49 197.6 214 51.4
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 7.1e-49 197.6 155 60.6
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.2e-48 196.8 146 67.8
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.6e-48 196.4 156 62.2
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 2.7e-48 195.7 152 63.2
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.5e-48 195.3 131 71.0
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 6.0e-48 194.5 156 60.9
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.7e-47 193.0 104 94.2
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.3e-46 188.3 188 53.2
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.1e-44 183.7 162 58.0
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.8e-44 183.0 156 56.4
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 6.9e-44 181.0 151 57.6
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 9.0e-44 180.6 154 56.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 9.0e-44 180.6 148 59.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.2e-43 180.3 154 55.8
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 2.0e-43 179.5 143 59.4
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 2.6e-43 179.1 143 59.4
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.3e-42 176.8 128 64.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.1e-41 173.7 151 55.6
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.9e-41 172.9 153 57.5
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 2.4e-41 172.6 146 58.2
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 8.1e-37 157.5 99 74.7
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 8.1e-37 157.5 114 64.9
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.6e-35 152.5 106 67.0
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 3.4e-35 152.1 106 67.9
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 7.6e-35 151.0 103 69.9
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.9e-33 146.4 147 55.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 2.4e-33 146.0 91 75.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 3.5e-32 142.1 144 47.9
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.4e-28 129.4 83 75.9
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 4.0e-28 128.6 109 59.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 9.0e-28 127.5 153 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.2e-26 122.9 129 45.7
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.3e-23 113.6 153 45.1
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.2e-19 100.5 153 35.9
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.3e-18 97.1 130 40.0
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 5.5e-17 91.7 50 84.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.2e-16 90.5 68 67.6
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.5e-16 89.0 61 67.2
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.5e-16 89.0 61 67.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 2.8e-13 79.3 128 33.6
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.7e-13 79.0 68 60.3
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 3.6e-08 62.4 118 30.5


User provided reference genes

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