Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 2162.5 1102 100.0
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1951.0 1105 91.9
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1943.3 1105 91.8
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1939.9 1105 91.7
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1814.7 1175 83.3
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1803.1 1108 85.5
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1525.8 1127 74.8
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1368.6 1127 68.7
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1304.3 1140 64.6
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 1237 61.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1260.7 1122 62.9
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1260.0 1152 61.3
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1250.0 1151 60.8
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1246.9 1148 61.7
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1243.4 1060 64.4
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1242.6 1160 61.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1240.3 1207 58.7
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1239.9 1144 61.7
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1234.2 1144 61.5
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1233.0 1161 59.9
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1232.2 1161 59.9
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1220.7 885 74.2
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1219.9 1109 63.9
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1213.7 1110 62.0
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1213.4 1145 60.1
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1212.2 1143 60.6
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1209.1 1199 59.3
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1204.1 1154 59.4
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1201.0 1201 57.7
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1197.6 1178 58.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1188.7 1017 63.6
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1188.3 964 66.5
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1184.5 1145 59.0
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1183.3 1145 59.4
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1181.8 1161 57.7
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1176.8 1019 63.2
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1171.8 1152 58.2
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1166.4 1033 61.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1165.6 1145 59.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1164.8 1140 59.0
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1161.0 1157 57.4
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1161.0 1156 57.5
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1158.3 1162 57.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1156.7 1224 55.1
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1156.4 1043 61.4
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1155.6 1227 54.4
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1150.2 924 66.5
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1149.8 1168 56.8
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1149.0 1167 58.4
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1145.6 1157 56.8
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1144.4 1045 60.6
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1144.4 883 69.4
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1141.3 1158 56.2
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1140.2 845 73.1
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1137.1 937 65.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1130.5 1090 58.4
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1129.0 942 64.3
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1127.1 1182 56.3
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1120.9 924 66.3
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1120.5 1106 57.6
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1119.8 1098 59.5
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1115.1 1214 54.8
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1102.8 1220 53.9
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1089.3 1235 53.4
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1079.3 945 61.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1078.2 934 62.3
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1077.4 932 62.3
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1075.1 947 62.0
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 7.5e-312 1073.9 1109 56.8
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.1e-308 1063.5 1221 53.1
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 5.0e-306 1054.7 994 60.0
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 7.5e-302 1040.8 1217 52.5
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.6e-299 1033.1 940 59.3
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 2.4e-292 1009.2 1183 51.1
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.8e-287 993.0 1019 56.5
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.3e-282 976.9 1033 55.0
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.5e-281 972.6 836 65.2
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.7e-277 959.9 1010 55.8
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-275 953.0 767 69.5
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.6e-275 951.8 864 61.0
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 6.0e-275 951.4 1040 54.4
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 2.2e-269 932.9 819 61.4
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 4.1e-268 928.7 871 61.7
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 1.7e-266 923.3 974 57.0
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 4.9e-261 905.2 992 53.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 7.6e-254 881.3 640 74.2
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 3.1e-247 859.4 1107 47.9
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.9e-246 854.4 967 49.5
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 2.1e-243 846.7 703 64.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 3.3e-241 839.3 701 63.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.3e-240 837.4 1007 47.8
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.4e-236 823.9 1017 47.8
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-228 797.0 962 48.6
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 9.3e-220 768.1 1123 44.8
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 9.3e-220 768.1 974 47.3
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 2.4e-215 753.4 600 67.5
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 2.7e-211 740.0 625 62.4
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 5.4e-183 646.0 712 55.6
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.4e-167 594.0 1058 41.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.7e-163 579.7 325 93.8
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.1e-162 577.0 482 62.4
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 7.5e-161 572.4 508 60.6
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.1e-154 552.0 553 59.9
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.4e-143 515.0 739 44.4
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 3.5e-142 510.4 395 68.1
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.4e-138 498.4 402 70.4
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.6e-137 494.2 768 40.4
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 6.4e-136 489.6 422 63.5
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.6e-116 423.3 249 91.2
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-107 395.2 428 55.6
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.1e-107 394.8 227 92.1
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 9.0e-98 362.8 355 59.2
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 2.0e-76 292.0 382 42.7
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-69 269.2 529 35.7
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.6e-62 245.7 230 55.2
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 3.4e-60 238.0 702 29.5
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 3.7e-59 234.6 322 44.7
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.8e-58 232.3 210 59.5
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 5.4e-58 230.7 206 61.2
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-54 219.2 231 52.4
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.3e-53 215.3 165 66.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-52 213.0 253 46.6
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.7e-51 209.1 697 27.7
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 7.0e-50 203.8 205 53.7
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.2e-44 186.4 445 37.5
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.0e-44 185.7 179 56.4
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 4.4e-44 184.5 742 25.9
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-42 179.9 752 25.4
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.4e-42 178.7 655 27.6
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 7.8e-41 173.7 746 25.6
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.9e-39 169.1 299 38.5
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 1.6e-38 166.0 115 73.0
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.8e-37 162.5 143 64.3
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.8e-36 157.5 416 30.0
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.7e-35 154.8 129 64.3
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.9e-35 154.5 156 53.2
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 8.3e-35 153.7 141 54.6
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.6e-33 147.9 876 24.1
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 8.6e-32 143.7 171 54.4
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-31 141.7 206 51.0
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-31 141.7 252 40.1
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 8.1e-30 137.1 124 60.5
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 1.3e-27 129.8 126 57.9
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.4e-26 125.6 750 24.3
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.4e-26 125.6 152 51.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 5.4e-26 124.4 803 24.7
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 1.0e-24 120.2 114 60.5
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 5.6e-23 114.4 479 25.5
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 8.1e-22 110.5 105 49.5
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.1e-21 110.2 82 62.2
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-20 105.5 335 28.7
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 5.4e-18 97.8 132 47.7
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.7e-16 90.5 288 28.5
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 4.8e-14 84.7 45 91.1
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 6.2e-14 84.3 246 33.3
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.8e-13 82.8 686 24.9
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-12 78.6 128 39.8
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.8e-12 77.8 129 34.1
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.4e-10 71.2 101 43.6
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.2e-06 57.8 178 31.5


User provided reference genes

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