Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.7e-100 369.4 190 100.0
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.9e-100 367.9 190 99.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 4.0e-78 295.0 193 77.7
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 9.8e-77 290.4 189 78.3
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-76 289.7 193 79.3
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-76 289.7 193 79.3
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.2e-76 289.3 190 78.9
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.1e-75 284.3 190 76.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.2e-74 283.5 190 76.8
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.6e-74 283.1 190 77.4
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.5e-74 282.0 190 75.8
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 6.0e-74 281.2 190 75.8
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.0e-73 280.4 190 77.4
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 3.0e-73 278.9 190 75.8
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 3.9e-73 278.5 189 74.6
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 6.6e-73 277.7 190 75.8
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.1e-72 276.9 190 75.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.5e-72 276.6 190 74.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.5e-72 276.6 190 74.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.5e-72 276.6 190 74.7
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.9e-72 276.2 190 76.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.9e-72 276.2 190 76.3
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 9.5e-72 273.9 190 75.3
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 9.5e-72 273.9 190 74.2
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 9.5e-72 273.9 193 76.2
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.6e-71 271.9 190 74.2
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 6.2e-71 271.2 195 75.4
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 6.2e-71 271.2 190 74.7
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 8.1e-71 270.8 190 75.8
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 8.1e-71 270.8 189 73.5
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.4e-70 270.0 192 76.0
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.1e-70 268.9 191 75.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.2e-70 268.1 191 74.3
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-69 266.9 191 74.3
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.2e-69 266.9 191 73.8
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.5e-69 266.5 191 75.4
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 2.0e-69 266.2 192 74.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.6e-69 265.8 180 76.1
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.4e-69 265.0 190 75.8
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.8e-69 264.6 174 78.2
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 7.6e-69 264.2 188 71.8
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 9.9e-69 263.8 192 73.4
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 9.9e-69 263.8 194 71.1
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.2e-68 262.7 191 72.3
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.9e-68 262.3 190 72.6
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 2.9e-68 262.3 189 72.5
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 3.7e-68 261.9 191 73.3
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.9e-68 261.5 190 72.6
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 4.9e-68 261.5 189 73.5
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.9e-68 261.5 189 72.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 8.4e-68 260.8 189 73.5
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.4e-67 260.0 179 77.1
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.9e-67 259.6 179 76.0
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 2.4e-67 259.2 192 74.5
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 3.2e-67 258.8 192 72.9
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 5.4e-67 258.1 186 72.6
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 5.4e-67 258.1 189 72.0
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.2e-66 256.9 189 73.0
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.6e-66 256.5 195 72.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.1e-66 256.1 191 70.7
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.7e-66 255.8 206 65.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 4.6e-66 255.0 189 73.5
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.6e-66 255.0 189 72.5
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.6e-66 255.0 189 70.4
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 7.8e-66 254.2 189 71.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 7.8e-66 254.2 190 72.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.0e-65 253.8 189 70.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.3e-65 253.4 172 77.3
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.3e-65 253.4 192 73.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 2.3e-65 252.7 192 72.9
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.3e-65 252.7 196 70.9
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.3e-65 252.7 191 71.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 8.6e-65 250.8 190 70.0
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 8.6e-65 250.8 189 67.7
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.5e-64 250.0 191 69.1
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 3.3e-64 248.8 229 62.0
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 5.6e-64 248.1 192 72.4
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 5.6e-64 248.1 192 72.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 7.3e-64 247.7 192 70.3
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.2e-63 246.9 162 78.4
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.6e-63 246.5 218 61.9
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 195 72.3
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 195 72.3
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.6e-63 245.4 190 68.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.7e-63 245.0 190 68.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 8.1e-63 244.2 193 71.0
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 8.1e-63 244.2 189 69.8
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.1e-62 243.8 190 70.5
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.1e-62 243.8 196 68.4
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.8e-62 243.0 192 70.3
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-62 242.7 193 70.5
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.4e-62 242.7 193 70.5
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.4e-62 242.7 193 70.5
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.8e-62 241.1 190 66.8
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 8.9e-62 240.7 190 68.9
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 7.6e-61 237.7 195 69.7
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 9.9e-61 237.3 191 70.2
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.8e-60 235.3 173 71.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.4e-59 232.6 180 71.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.2e-59 231.9 172 75.6
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.7e-58 229.2 180 71.1
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 6.0e-58 228.0 218 59.6
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.0e-57 227.3 202 62.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.3e-57 226.9 162 72.8
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-57 226.1 159 72.3
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 8.7e-57 224.2 140 82.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 8.7e-57 224.2 207 60.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.9e-56 223.0 189 64.6
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-56 222.2 169 72.2
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-56 222.2 151 78.8
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 3.3e-56 222.2 139 80.6
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 4.3e-56 221.9 151 78.1
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 4.3e-56 221.9 151 78.1
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 4.3e-56 221.9 138 82.6
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 7.3e-56 221.1 126 87.3
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 7.3e-56 221.1 139 80.6
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.3e-55 220.3 190 62.1
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-55 219.9 158 76.6
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.8e-55 218.4 196 67.3
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.1e-54 217.2 125 85.6
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.4e-54 216.9 157 75.2
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.8e-54 216.5 193 66.3
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.4e-54 216.1 189 64.0
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 5.3e-54 214.9 135 83.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-53 213.8 199 59.3
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 2.6e-53 212.6 156 71.8
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 4.4e-53 211.8 197 61.4
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 5.8e-53 211.5 125 86.4
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.3e-52 210.3 124 85.5
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.2e-52 209.5 124 85.5
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 4.2e-51 205.3 199 58.3
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.0e-50 201.4 175 60.0
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 7.9e-50 201.1 146 73.3
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-49 200.3 146 73.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-49 199.9 146 73.3
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.3e-49 199.5 151 72.2
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 3.9e-49 198.7 175 60.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 5.1e-49 198.4 146 75.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 6.6e-49 198.0 175 59.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.6e-48 194.9 158 65.8
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 7.3e-48 194.5 158 65.8
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 6.2e-47 191.4 141 69.5
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 4.9e-44 181.8 197 54.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.9e-40 169.9 125 68.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.9e-40 169.9 157 59.2
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.3e-40 169.1 194 52.1
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.1e-39 166.4 157 58.6
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 5.3e-38 161.8 140 62.9
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 4.5e-37 158.7 124 63.7
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.9e-36 156.0 123 65.9
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.4e-35 153.7 140 60.7
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.6e-34 150.2 125 59.2
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.1e-34 149.8 169 50.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.9e-34 147.9 113 67.3
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.0e-33 147.5 191 46.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.9e-33 145.6 114 62.3
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 2.8e-31 139.4 154 53.2
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 6.3e-31 138.3 95 76.8
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.5e-29 133.7 79 84.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.4e-29 132.5 125 60.0
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.9e-29 131.7 103 59.2
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.3e-24 115.5 69 84.1
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.8e-23 112.1 68 83.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.8e-22 110.2 68 82.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 7.2e-19 98.2 56 85.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.2e-18 97.4 53 88.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 2.7e-18 96.3 127 45.7
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 4.6e-18 95.5 127 45.7
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 4.6e-18 95.5 69 68.1
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.4e-17 94.0 85 61.2
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 6.7e-17 91.7 85 60.0
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.8e-15 86.3 124 39.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.8e-14 83.6 47 85.1
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 2.2e-12 76.6 108 48.1
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 6.7e-09 65.1 50 66.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 6.7e-09 65.1 82 42.7
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.1e-08 64.3 46 65.2
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 2.0e-08 63.5 46 65.2
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 2.8e-07 59.7 46 60.9


User provided reference genes

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