Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.4e-159 565.5 291 100.0
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.1e-159 564.7 291 99.7
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.7e-144 516.2 292 89.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 3.8e-144 515.0 322 82.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.1e-143 513.5 292 88.7
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 9.3e-143 510.4 292 87.7
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.0e-141 506.9 292 87.0
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.3e-141 506.5 292 87.3
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 3.0e-141 505.4 291 86.6
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.3e-139 500.0 292 86.0
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 3.6e-139 498.4 293 86.7
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 6.2e-139 497.7 292 85.3
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 8.1e-139 497.3 292 86.3
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.4e-138 496.5 292 85.6
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.1e-138 495.4 294 85.7
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.0e-138 495.0 292 86.0
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 6.9e-138 494.2 290 85.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 9.0e-138 493.8 292 86.0
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.0e-138 493.8 292 84.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.8e-137 491.1 292 84.2
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 7.6e-137 490.7 290 85.2
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.7e-136 489.6 291 85.2
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.7e-136 489.6 292 83.9
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.1e-135 486.9 292 82.9
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.9e-135 486.1 290 84.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.4e-135 485.7 293 84.0
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.2e-135 485.0 292 84.2
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.2e-134 483.4 292 84.9
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.7e-134 482.3 291 82.1
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.3e-133 479.9 290 84.5
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.3e-133 479.9 291 82.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 2.3e-133 479.2 290 82.4
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 5.1e-133 478.0 292 83.6
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 6.7e-133 477.6 292 82.5
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 8.7e-133 477.2 291 81.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 8.7e-133 477.2 291 83.5
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 8.7e-133 477.2 290 82.1
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-132 476.5 294 81.0
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.5e-132 476.5 280 86.1
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.5e-132 475.7 321 78.5
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.5e-132 475.7 294 82.3
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 3.3e-132 475.3 290 81.0
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 3.3e-132 475.3 305 79.0
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 9.6e-132 473.8 291 81.1
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 9.6e-132 473.8 291 82.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 83.8
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.8e-131 472.2 272 87.1
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.7e-131 471.9 291 80.8
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 4.8e-131 471.5 326 74.8
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.1e-130 470.3 291 83.5
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.4e-130 469.2 293 81.6
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 3.1e-130 468.8 291 80.1
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 9.0e-130 467.2 292 80.8
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 80.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.5e-129 466.5 292 80.8
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.4e-129 465.3 293 80.5
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.8e-129 464.5 290 80.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 3.8e-128 461.8 291 78.7
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.1e-127 460.3 291 80.1
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.9e-127 459.5 292 80.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.5e-127 459.1 297 78.5
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.2e-126 456.8 292 79.8
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.6e-126 456.4 292 78.8
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.3e-125 453.4 291 75.3
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.8e-125 453.0 292 79.5
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 8.7e-125 450.7 294 78.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.1e-124 450.3 291 79.4
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 77.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 4.3e-124 448.4 268 82.5
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.1e-123 446.0 290 77.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 4.8e-123 444.9 292 77.7
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.8e-122 443.0 290 76.2
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.4e-122 442.6 292 77.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 74.3
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 6.9e-122 441.0 295 77.6
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 9.0e-122 440.7 324 71.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.2e-121 440.3 290 76.2
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.0e-121 439.5 292 76.4
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.0e-121 439.5 294 74.8
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 5.8e-121 438.0 292 78.4
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 4.9e-120 434.9 293 77.1
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 6.5e-120 434.5 291 72.9
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.1e-119 433.7 290 77.2
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.9e-119 433.0 292 76.4
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-119 431.8 310 71.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-119 431.8 308 72.1
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.5e-119 431.4 291 76.6
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.5e-119 431.4 291 76.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-118 429.1 293 74.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.7e-118 429.1 285 76.8
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.6e-115 419.9 385 62.3
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.2e-115 419.5 237 88.2
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 3.7e-115 418.7 291 73.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 3.7e-115 418.7 291 73.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 4.1e-114 415.2 289 73.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.0e-113 412.9 290 73.8
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.4e-113 412.1 292 74.7
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 4.5e-113 411.8 291 73.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.3e-112 410.2 290 73.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.7e-112 409.8 293 72.7
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.7e-112 409.8 293 72.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-112 409.5 291 73.5
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.9e-112 409.1 291 73.5
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 5.0e-112 408.3 292 72.9
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 5.0e-112 408.3 292 72.6
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 8.5e-112 407.5 291 71.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.1e-110 402.9 298 70.1
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 3.9e-109 398.7 228 87.3
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 5.1e-109 398.3 292 68.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 8.8e-109 397.5 291 71.8
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 2.0e-108 396.4 291 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.2e-107 392.9 293 69.3
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.5e-105 386.7 297 68.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 3.4e-105 385.6 291 68.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-101 373.2 290 67.9
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.7e-99 366.7 297 66.3
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.7e-99 365.5 228 78.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 8.2e-99 364.4 292 69.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.2e-97 360.5 191 92.1
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.2e-97 360.5 292 64.7
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 3.5e-97 359.0 238 76.5
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 7.7e-97 357.8 259 73.0
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 8.5e-96 354.4 292 65.8
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.0e-93 347.4 208 84.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-92 342.8 271 67.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.9e-87 326.6 288 60.1
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 5.2e-85 318.5 285 58.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.4e-77 293.9 187 77.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 9.8e-76 287.7 191 72.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 2.2e-75 286.6 298 51.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 6.3e-75 285.0 297 53.2
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 7.0e-74 281.6 196 73.0
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 6.3e-67 258.5 293 50.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.3e-67 258.5 289 53.3
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 8.3e-59 231.5 294 49.7
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 8.3e-59 231.5 294 49.7
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 8.3e-59 231.5 294 49.7
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.5e-52 210.7 262 50.0
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 9.5e-47 191.4 105 88.6
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-44 183.7 108 83.3
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-42 176.8 150 61.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.2e-41 174.5 227 47.1
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 7.3e-39 165.2 154 59.7
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.1e-38 163.7 154 59.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.1e-38 163.7 154 59.1
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 4.9e-35 152.5 84 90.5
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 4.6e-33 146.0 188 42.0
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.5e-31 141.0 106 64.2
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 9.6e-31 138.3 92 78.3
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.9e-27 126.7 73 82.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.9e-27 126.7 73 82.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.1e-26 124.8 72 81.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.5e-23 114.4 95 66.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 7.3e-23 112.1 68 77.9
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.4e-21 107.8 187 40.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.9e-19 99.4 60 75.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.9e-18 97.4 128 44.5
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 5.6e-15 85.9 59 69.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.7e-14 83.2 254 30.3
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 3.1e-13 80.1 86 54.7
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.1e-13 80.1 58 70.7
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 8.2e-06 55.5 44 59.1


User provided reference genes

Program Settings