Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-83 312.8 155 100.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.3e-82 307.0 155 98.1
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.3e-82 307.0 155 96.8
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 4.6e-72 274.6 155 85.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.0e-71 271.9 155 84.5
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 5.0e-71 271.2 155 83.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 83.2
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.5e-70 268.9 155 81.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.3e-70 268.1 155 82.6
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.3e-70 268.1 150 90.7
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 4.3e-70 268.1 155 83.2
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 82.6
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 81.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.1e-69 265.8 155 83.2
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.8e-69 265.4 155 81.3
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.0e-69 263.8 150 89.3
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 8.0e-69 263.8 155 80.6
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 83.2
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 78.7
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 79.4
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 80.6
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.1e-68 261.9 154 79.9
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 6.8e-68 260.8 155 81.9
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 81.9
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 78.7
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 78.1
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 81.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 81.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 3.4e-67 258.5 155 80.6
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.4e-67 258.5 155 78.1
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 80.6
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 80.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.8e-67 256.9 155 77.4
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 76.8
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 78.1
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.1e-65 253.4 155 76.1
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.1e-65 253.4 155 75.5
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 73.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 74.8
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 76.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 77.4
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 74.2
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 75.5
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 74.2
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 77.4
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 74.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 7.8e-64 247.3 155 76.1
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 77.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 74.2
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 74.8
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 6.6e-63 244.2 155 72.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 72.3
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 72.3
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 73.5
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 74.2
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 74.2
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.3e-62 240.7 156 75.6
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.3e-62 240.7 156 75.6
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.1e-60 236.9 174 65.5
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 73.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 72.9
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 73.5
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.9
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 72.3
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 71.6
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 72.9
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 73.5
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 72.3
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 71.6
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.0e-59 232.6 153 71.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.6e-59 232.3 145 75.2
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 7.5e-59 230.7 154 71.4
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 69.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 70.3
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 70.3
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 72.9
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.2e-58 229.2 214 57.0
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.2e-58 229.2 151 72.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 72.3
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.7e-58 228.4 155 71.6
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 4.9e-58 228.0 156 72.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 69.7
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 6.4e-58 227.6 156 72.4
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 8.3e-58 227.3 156 71.8
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-57 226.9 155 69.7
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.4e-57 226.5 133 78.9
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.9e-57 226.1 152 69.1
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 4.1e-57 224.9 145 73.8
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 71.6
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 69.7
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 71.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 70.3
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 68.4
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 3.5e-56 221.9 144 71.5
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 67.7
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.0e-55 220.3 152 70.4
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.7e-55 219.5 156 70.5
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.7e-55 219.5 152 69.1
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.3e-55 219.2 156 68.6
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.6e-55 217.6 127 79.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 6.6e-55 217.6 153 67.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 5.6e-54 214.5 147 69.4
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.1e-53 212.6 147 72.1
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 2.8e-53 212.2 133 74.4
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.1e-52 210.3 132 77.3
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 7.6e-51 204.1 162 62.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.7e-50 203.0 155 62.6
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.9e-50 202.2 148 64.9
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.9e-50 201.4 152 64.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.1e-49 200.3 188 55.9
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.1e-49 200.3 152 61.8
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 3.2e-49 198.7 155 66.5
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 4.2e-49 198.4 153 64.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 7.1e-49 197.6 154 62.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 7.1e-49 197.6 156 61.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 9.2e-49 197.2 154 61.0
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 9.2e-49 197.2 154 62.3
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.3e-47 193.4 153 60.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 3.9e-47 191.8 154 60.4
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.1e-45 186.0 126 68.3
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 5.8e-43 177.9 114 75.4
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 2.4e-41 172.6 146 61.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 5.4e-41 171.4 144 55.6
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.3e-39 166.8 103 76.7
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.7e-39 166.4 99 79.8
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 6.2e-37 157.9 109 66.1
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 8.1e-37 157.5 109 67.0
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.1e-37 157.5 104 70.2
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.4e-36 156.8 89 83.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.4e-33 146.0 147 52.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 4.2e-33 145.2 109 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.6e-32 143.3 156 46.8
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.3e-29 133.7 153 45.8
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.1e-28 130.6 83 72.3
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 3.0e-23 112.5 152 43.4
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 8.2e-21 104.4 141 39.7
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 5.3e-20 101.7 130 43.1
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.8e-19 98.2 61 75.4
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.8e-19 98.2 61 75.4
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.2e-16 90.5 50 80.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.1e-16 88.2 68 61.8
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 7.9e-16 87.8 129 38.0
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.8e-12 76.6 68 55.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 1.5e-11 73.6 117 35.0


User provided reference genes

Program Settings