Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.8e-57 224.6 108 100.0
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.5e-40 168.7 91 91.2
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-36 156.4 80 93.8
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 6.3e-36 154.1 80 91.2
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-35 152.9 81 87.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.8e-35 152.5 100 73.0
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.8e-35 152.5 90 77.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.8e-35 152.5 90 77.8
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 2.4e-35 152.1 80 88.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 2.4e-35 152.1 87 80.5
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.4e-35 152.1 87 80.5
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-35 152.1 80 88.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-35 152.1 80 88.8
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.4e-35 152.1 80 88.8
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 4.1e-35 151.4 80 87.5
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 4.1e-35 151.4 80 87.5
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 4.1e-35 151.4 85 82.4
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 5.3e-35 151.0 80 87.5
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.3e-35 151.0 80 87.5
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.3e-35 151.0 85 82.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.3e-35 151.0 85 82.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 5.3e-35 151.0 80 87.5
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 5.3e-35 151.0 80 87.5
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 5.3e-35 151.0 85 82.4
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 6.9e-35 150.6 87 79.3
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 6.9e-35 150.6 80 86.2
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.0e-35 150.2 90 75.6
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 9.0e-35 150.2 80 86.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 9.0e-35 150.2 87 79.3
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.2e-34 149.8 85 81.2
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.2e-34 149.8 80 86.2
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.5e-34 149.4 80 86.2
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.5e-34 149.4 85 81.2
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 2.0e-34 149.1 85 81.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 2.0e-34 149.1 80 85.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 2.0e-34 149.1 87 79.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.6e-34 148.7 87 78.2
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.6e-34 148.7 80 86.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.6e-34 148.7 81 85.2
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.6e-34 148.7 80 86.2
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.6e-34 148.7 85 81.2
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.4e-34 148.3 87 79.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.4e-34 148.3 85 81.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.5e-34 147.9 78 85.9
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 5.9e-34 147.5 80 85.0
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 5.9e-34 147.5 80 83.8
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 5.9e-34 147.5 80 83.8
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 5.9e-34 147.5 80 83.8
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.0e-33 146.7 85 80.0
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.0e-33 146.7 80 82.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.3e-33 146.4 80 82.5
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.3e-33 146.4 80 82.5
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.3e-33 146.4 80 85.0
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.7e-33 146.0 80 85.0
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.7e-33 146.0 80 83.8
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.2e-33 145.6 87 75.9
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.2e-33 145.6 85 80.0
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.2e-33 145.6 80 83.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.8e-33 144.8 85 76.5
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 5.0e-33 144.4 80 81.2
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.1e-32 143.3 90 71.1
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.1e-32 143.3 80 83.8
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.1e-32 143.3 90 71.1
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.4e-32 142.9 79 83.5
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.9e-32 142.5 90 73.3
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.9e-32 142.5 90 71.1
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.2e-32 141.7 90 73.3
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 3.2e-32 141.7 90 71.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 4.2e-32 141.4 90 72.2
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 4.2e-32 141.4 90 72.2
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 4.2e-32 141.4 85 76.5
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 5.5e-32 141.0 80 81.2
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 5.5e-32 141.0 90 72.2
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 5.5e-32 141.0 90 72.2
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 7.2e-32 140.6 85 75.3
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 7.2e-32 140.6 80 80.0
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.2e-31 139.8 80 80.0
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.2e-31 139.8 80 78.8
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.2e-31 139.8 80 78.8
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.6e-31 139.4 90 71.1
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-31 139.4 68 98.5
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.6e-31 139.4 90 70.0
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.1e-31 139.0 80 78.8
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.1e-31 139.0 90 71.1
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.7e-31 138.7 80 78.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.7e-31 138.7 75 89.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 2.7e-31 138.7 75 84.0
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.6e-31 138.3 80 78.8
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 4.6e-31 137.9 86 73.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 7.9e-31 137.1 80 77.5
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 7.9e-31 137.1 80 77.5
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 7.9e-31 137.1 80 77.5
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 7.9e-31 137.1 85 70.6
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.4e-30 136.3 80 77.5
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.8e-30 136.0 80 76.2
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 2.3e-30 135.6 80 77.5
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.9e-30 134.8 80 77.5
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 3.9e-30 134.8 71 88.7
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-29 132.9 86 82.6
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.7e-29 131.0 80 72.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 9.7e-29 130.2 80 73.8
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.2e-28 129.0 89 74.2
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.8e-28 128.6 80 67.5
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.4e-27 126.3 80 67.5
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.4e-27 125.6 80 68.8
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.1e-27 125.2 78 70.5
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 5.3e-27 124.4 70 80.0
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 6.9e-27 124.0 138 50.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 9.1e-27 123.6 77 72.7
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.2e-26 123.2 112 57.1
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.5e-26 122.9 79 70.9
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.4e-26 121.7 112 56.2
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 7.7e-26 120.6 74 71.6
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.2e-25 119.0 85 70.6
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.2e-23 113.2 80 61.2
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 2.7e-23 112.1 154 42.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 8.2e-20 100.5 88 58.0
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.2e-18 96.7 81 63.0
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 3.6e-15 85.1 46 80.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 1.4e-14 83.2 45 80.0
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.2e-12 75.9 41 85.4
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-11 73.2 41 80.5
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 4.5e-10 68.2 41 70.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.9e-10 67.8 47 61.7
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.7e-10 67.4 34 91.2
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.9e-09 65.5 39 74.4
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 5.0e-09 64.7 35 82.9
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.0e-09 64.7 42 69.0
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 6.5e-09 64.3 37 78.4
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.9e-08 62.8 40 70.0
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 5.5e-08 61.2 41 65.9
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 9.4e-08 60.5 35 74.3
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 2.1e-07 59.3 35 71.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 2.1e-07 59.3 35 71.4
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 4.7e-07 58.2 42 69.0
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.0e-07 57.4 41 63.4


User provided reference genes

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