Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.0e-139 500.0 243 100.0
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 8.1e-108 394.0 304 69.1
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 6.7e-78 294.7 299 53.8
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 9.0e-75 284.3 312 51.3
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 1.7e-73 280.0 328 52.4
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.2e-73 279.6 298 52.3
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 1.1e-72 277.3 303 53.1
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.5e-72 275.0 271 54.2
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.3e-72 274.2 297 53.2
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-71 273.5 300 51.0
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-71 273.5 300 51.0
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-71 273.5 300 51.0
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 3.5e-71 272.3 303 50.5
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.6e-71 271.9 212 63.2
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 4.6e-71 271.9 212 62.3
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 1.3e-70 270.4 260 56.9
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-70 270.0 260 55.4
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-70 270.0 260 55.4
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.8e-70 270.0 291 49.5
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 3.0e-70 269.2 212 62.7
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 6.7e-70 268.1 299 52.8
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 6.7e-70 268.1 239 57.7
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.5e-69 266.9 286 52.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.5e-69 266.9 291 51.2
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.9e-69 266.5 289 53.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.9e-69 266.5 290 51.4
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.5e-69 266.2 261 54.8
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.3e-68 263.8 293 48.8
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.2e-68 263.1 300 49.3
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 2.8e-68 262.7 268 51.9
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 4.8e-68 261.9 265 51.3
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 6.3e-68 261.5 263 52.5
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 8.2e-68 261.2 220 59.5
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.1e-67 260.8 214 59.3
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.4e-67 260.4 284 50.0
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.8e-67 260.0 271 50.9
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.4e-67 259.6 273 51.3
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 3.1e-67 259.2 306 47.7
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 4.1e-67 258.8 212 61.8
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.5e-66 256.9 282 49.3
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.5e-66 256.9 314 47.5
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.0e-66 256.5 296 46.6
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.6e-66 256.1 292 50.0
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.6e-66 256.1 216 58.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 4.5e-66 255.4 294 48.6
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 4.5e-66 255.4 210 59.5
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 5.9e-66 255.0 212 58.0
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.9e-66 255.0 296 46.3
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 7.7e-66 254.6 212 58.0
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.0e-65 254.2 276 50.0
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.0e-65 254.2 302 46.4
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.0e-65 254.2 216 57.9
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.0e-65 254.2 263 52.1
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.3e-65 253.8 216 57.9
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 2.2e-65 253.1 215 60.0
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.2e-65 253.1 212 56.1
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 2.9e-65 252.7 278 48.6
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.9e-65 252.7 296 45.9
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 5.0e-65 251.9 270 51.1
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 8.5e-65 251.1 212 56.6
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 4.2e-64 248.8 303 46.5
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 7.2e-64 248.1 273 47.3
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 9.4e-64 247.7 291 46.4
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.2e-63 247.3 293 46.8
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.2e-63 247.3 212 54.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 3.6e-63 245.7 293 46.8
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 6.1e-63 245.0 220 53.2
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 6.1e-63 245.0 295 46.1
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 6.1e-63 245.0 212 54.2
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 7.9e-63 244.6 258 51.2
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 7.9e-63 244.6 295 45.8
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 7.9e-63 244.6 273 49.1
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.0e-62 244.2 270 50.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.8e-62 243.4 305 45.6
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.8e-62 243.4 212 57.1
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.9e-62 242.3 212 56.6
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 5.1e-62 241.9 206 59.2
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 8.8e-62 241.1 208 56.7
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 8.8e-62 241.1 212 56.1
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.1e-61 240.7 259 51.4
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 4.3e-61 238.8 212 55.7
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 4.3e-61 238.8 294 44.6
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 5.7e-61 238.4 212 55.7
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 5.7e-61 238.4 305 43.6
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 7.4e-61 238.0 212 55.7
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 7.4e-61 238.0 212 56.1
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 2.2e-60 236.5 291 44.7
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 2.8e-60 236.1 215 53.5
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 2.8e-60 236.1 215 53.5
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 2.8e-60 236.1 215 53.5
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 3.7e-60 235.7 209 57.4
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 4.8e-60 235.3 212 54.7
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.1e-59 234.2 205 57.1
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.4e-58 229.2 232 51.7
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 5.9e-58 228.4 188 60.1
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.2e-57 226.5 266 45.5
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.9e-57 226.1 200 55.5
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 2.9e-57 226.1 206 52.9
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 5.0e-57 225.3 211 52.1
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 8.5e-57 224.6 273 44.0
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.4e-56 223.8 211 51.7
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 9.4e-56 221.1 138 72.5
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 9.4e-56 221.1 215 52.1
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 9.4e-56 221.1 138 71.7
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.2e-55 220.7 204 51.5
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 7.9e-55 218.0 232 50.4
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.0e-54 217.6 208 50.5
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.0e-54 217.6 202 51.5
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.0e-54 217.6 257 44.7
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 2.3e-54 216.5 212 50.9
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.5e-53 213.8 270 43.3
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.6e-53 213.0 238 48.7
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 7.4e-53 211.5 266 44.0
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 7.4e-53 211.5 270 44.1
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 9.7e-53 211.1 266 44.0
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.7e-52 210.3 266 44.4
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.7e-52 210.3 266 44.4
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-52 210.3 266 44.4
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.7e-52 210.3 266 44.4
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.7e-52 210.3 265 43.8
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 2.2e-52 209.9 266 44.0
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.8e-52 209.5 262 43.9
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.1e-51 207.6 206 50.5
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.4e-51 206.5 216 48.6
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 4.1e-51 205.7 132 72.0
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 9.1e-51 204.5 202 49.5
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 9.1e-51 204.5 207 49.3
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.2e-50 204.1 205 49.8
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 3.5e-50 202.6 199 50.3
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.0e-49 201.1 267 41.9
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.7e-49 200.3 202 52.0
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 8.5e-49 198.0 264 42.4
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 8.5e-49 198.0 206 46.6
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.1e-48 197.6 282 41.1
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.6e-47 193.7 264 41.7
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.1e-47 193.4 204 46.6
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 3.6e-47 192.6 135 61.5
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 3.9e-46 189.1 258 42.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 5.2e-46 188.7 264 40.9
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.1e-45 187.6 264 41.3
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 2.8e-44 183.0 206 45.1
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 7.0e-43 178.3 208 46.2
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.0e-42 176.8 238 40.3
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 8.5e-41 171.4 211 44.1
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.2e-40 169.1 137 59.9
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.6e-39 166.0 216 43.1
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.2e-37 161.0 112 67.9
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 4.4e-37 159.1 206 42.7
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 9.7e-37 157.9 200 41.0
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 8.3e-36 154.8 279 35.5
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 1.8e-35 153.7 261 37.5
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 5.9e-34 148.7 193 42.0
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.7e-33 147.1 152 50.0
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.0e-33 145.6 234 37.6
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.5e-32 144.1 219 36.1
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.2e-32 142.9 211 37.9
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 5.5e-32 142.1 91 72.5
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 3.6e-31 139.4 207 38.6
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.4e-30 137.5 214 38.8
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.3e-30 136.7 210 35.7
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.6e-29 133.3 183 38.8
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 3.4e-29 132.9 207 37.2
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.6e-26 124.0 211 34.6
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.9e-25 119.8 113 52.2
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 6.6e-25 118.6 178 36.5
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.1e-24 117.9 130 45.4
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 2.5e-24 116.7 189 37.6
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 2.0e-21 107.1 215 34.9
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.4e-21 105.9 205 32.7
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 5.7e-21 105.5 155 40.6
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.3e-20 104.4 313 27.5
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.3e-16 89.7 109 43.1
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-09 67.0 92 39.1
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.9e-08 63.9 90 38.9
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 6.8e-06 55.5 62 43.5


User provided reference genes

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