Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.3e-78 295.4 145 100.0
Eucgr.L00513 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.3e-78 295.4 145 100.0
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 8.9e-78 293.5 145 97.9
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.4e-77 291.2 145 97.2
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 7.5e-77 290.4 145 97.2
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 7.5e-77 290.4 145 96.6
Cpa.g.sc1387.1 Carica papaya HOM05D003084 ORTHO05D003580 9.8e-77 290.0 145 95.9
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.3e-76 289.7 145 96.6
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.7e-76 289.3 145 95.9
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 1.7e-76 289.3 145 96.6
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.7e-76 289.3 145 96.6
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 2.2e-76 288.9 145 96.6
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 2.2e-76 288.9 145 96.6
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 2.2e-76 288.9 145 96.6
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.9e-76 288.5 145 94.5
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 2.9e-76 288.5 145 95.2
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.7e-76 288.1 145 95.2
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.7e-76 288.1 145 95.2
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 3.7e-76 288.1 145 96.6
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 95.9
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 95.9
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 95.9
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 94.5
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 94.5
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 95.9
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 4.9e-76 287.7 145 95.2
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 6.4e-76 287.3 145 95.9
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 6.4e-76 287.3 145 95.9
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 6.4e-76 287.3 145 95.9
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 94.5
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 95.2
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 93.8
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 8.3e-76 287.0 145 95.2
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 94.5
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 93.8
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 93.1
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 95.9
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 93.1
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 95.9
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 95.9
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.1e-75 286.6 145 95.9
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.4e-75 286.2 145 95.2
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.4e-75 286.2 145 95.2
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 1.4e-75 286.2 144 95.1
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.4e-75 286.2 144 94.4
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.4e-75 286.2 145 95.2
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.4e-75 286.2 145 94.5
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.8e-75 285.8 145 93.8
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.8e-75 285.8 145 95.2
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 95.2
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 94.5
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 94.5
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.4e-75 285.4 145 93.8
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.2e-75 285.0 145 95.2
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 5.4e-75 284.3 145 94.5
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 5.4e-75 284.3 145 92.4
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 5.4e-75 284.3 145 93.8
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 5.4e-75 284.3 145 93.8
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 5.4e-75 284.3 145 93.8
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 5.4e-75 284.3 145 93.8
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 7.0e-75 283.9 145 93.1
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 7.0e-75 283.9 149 93.3
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 7.0e-75 283.9 149 93.3
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 7.0e-75 283.9 149 93.3
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 7.0e-75 283.9 145 94.5
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 9.2e-75 283.5 145 95.2
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 9.2e-75 283.5 145 93.8
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 9.2e-75 283.5 145 93.8
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 9.2e-75 283.5 145 92.4
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 9.2e-75 283.5 145 94.5
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.2e-74 283.1 143 95.1
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.2e-74 283.1 143 95.1
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.2e-74 283.1 145 93.1
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.2e-74 283.1 145 93.1
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 1.6e-74 282.7 145 93.8
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.6e-74 282.7 145 93.8
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.6e-74 282.7 145 93.8
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.6e-74 282.7 145 93.8
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.6e-74 282.7 145 95.2
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 2.0e-74 282.3 145 93.1
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 2.0e-74 282.3 145 93.8
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.7e-74 282.0 145 93.8
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 3.5e-74 281.6 145 94.5
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 4.6e-74 281.2 145 92.4
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 4.6e-74 281.2 145 93.8
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 6.0e-74 280.8 145 93.8
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 6.0e-74 280.8 143 93.7
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 7.8e-74 280.4 143 93.0
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 7.8e-74 280.4 145 92.4
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.0e-73 280.0 145 92.4
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 1.3e-73 279.6 145 93.1
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.3e-73 279.6 145 93.8
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.7e-73 279.3 144 91.7
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.7e-73 279.3 146 91.8
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.7e-73 279.3 145 91.7
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.0e-73 278.5 140 95.0
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 3.0e-73 278.5 145 91.0
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.0e-73 277.7 145 91.0
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 5.0e-73 277.7 145 91.0
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.6e-73 277.3 145 91.7
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.6e-73 277.3 145 91.7
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.6e-73 277.3 145 91.7
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 6.6e-73 277.3 145 91.0
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 6.6e-73 277.3 145 91.0
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 1.5e-72 276.2 145 91.0
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.5e-72 276.2 145 89.7
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.9e-72 275.8 145 89.7
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.9e-72 275.8 145 91.0
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 2.5e-72 275.4 145 89.0
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 2.5e-72 275.4 145 90.3
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.3e-72 275.0 143 92.3
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 5.6e-72 274.2 145 90.3
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 1.2e-71 273.1 145 89.0
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.2e-71 273.1 145 89.0
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.6e-71 272.7 144 88.9
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 2.1e-71 272.3 145 88.3
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 4.7e-71 271.2 145 87.6
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 4.0e-70 268.1 146 88.4
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.8e-70 267.3 145 89.7
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 1.2e-69 266.5 143 91.6
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 5.8e-69 264.2 145 84.8
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 6.4e-68 260.8 133 94.0
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 2.4e-67 258.8 135 91.1
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 7.0e-67 257.3 143 86.0
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 7.8e-66 253.8 131 90.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 8.6e-65 250.4 135 89.6
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 2.8e-63 245.4 145 80.7
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.2e-62 241.1 146 77.4
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.2e-61 240.0 146 76.7
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 3.3e-56 221.9 160 68.1
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.1e-55 219.2 114 89.5
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 3.6e-55 218.4 141 74.5
RcHm_v2.0_Chr5g0043931 Rosa chinensis HOM05D003084 ORTHO05D003580 5.2e-54 214.5 111 91.0
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 6.8e-54 214.2 147 70.1
Oeu042069.1 Olea europaea HOM05D003084 ORTHO05D003580 2.2e-52 209.1 111 87.4
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 6.4e-52 207.6 125 82.4
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 5.4e-51 204.5 104 96.2
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 8.1e-47 190.7 145 63.4
MD12G1233900 Malus domestica HOM05D003084 ORTHO05D003580 2.4e-43 179.1 110 85.5
DCAR_017866 Daucus carota HOM05D003084 ORTHO05D003580 4.0e-30 135.2 75 86.7
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.5e-24 115.9 58 93.1
TPR.G40556 Trifolium pratense HOM05D003084 ORTHO05D003580 3.3e-24 115.5 65 81.5
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 4.5e-21 105.1 51 100.0
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 7.6e-21 104.4 145 46.2
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 2.9e-20 102.4 52 90.4
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 5.7e-08 61.6 31 93.5


User provided reference genes

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