Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 0.0e+00 1192.9 734 100.0
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 9.4e-301 1036.6 697 94.1
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.1e-204 716.5 651 68.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.1e-204 716.5 578 72.7
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 3.2e-200 702.6 570 73.5
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.6e-194 682.9 571 71.5
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 5.9e-194 681.8 679 65.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 7.7e-194 681.4 704 61.8
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.1e-191 673.3 677 62.9
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 6.1e-191 671.8 587 68.7
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.7e-189 665.2 587 68.3
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.2e-188 663.3 744 60.3
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 3.1e-187 659.4 570 70.9
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 4.1e-187 659.1 575 69.6
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.5e-186 657.1 585 68.7
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.5e-186 657.1 676 64.6
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 3.4e-186 656.0 491 77.8
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 3.4e-186 656.0 491 78.2
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 8.5e-185 651.4 694 62.1
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 5.5e-184 648.7 731 64.3
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 5.5e-184 648.7 753 58.4
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 7.2e-184 648.3 554 71.1
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.8e-182 643.7 588 67.5
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 3.0e-182 642.9 715 62.2
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 3.9e-182 642.5 714 61.2
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 5.1e-182 642.1 696 62.6
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 8.8e-182 641.3 574 70.9
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.1e-181 641.0 664 64.5
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.0e-181 640.2 584 68.3
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.4e-181 639.0 567 67.4
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 7.4e-181 638.3 729 60.6
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 9.7e-181 637.9 700 60.1
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 3.7e-180 636.0 671 62.7
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.8e-180 635.6 708 61.6
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 6.3e-180 635.2 585 68.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.4e-179 634.0 690 60.3
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.1e-179 632.9 611 66.6
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 3.1e-179 632.9 570 68.2
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 9.1e-179 631.3 663 64.0
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-178 630.9 599 67.3
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.5e-178 630.6 611 66.6
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.5e-176 624.0 575 65.4
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.2e-175 620.9 553 69.1
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 3.6e-175 619.4 576 68.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 8.0e-175 618.2 576 64.8
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.0e-174 617.8 671 61.1
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 3.3e-173 612.8 679 59.1
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.3e-173 612.8 574 64.3
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.7e-172 610.5 564 68.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 3.7e-172 609.4 589 64.3
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.1e-171 607.8 569 67.8
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 2.6e-170 603.2 522 68.8
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 5.9e-170 602.1 720 58.2
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 5.9e-170 602.1 732 57.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 7.7e-170 601.7 583 65.0
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 6.5e-169 598.6 546 64.3
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 8.5e-169 598.2 704 58.1
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.1e-168 597.8 570 63.3
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 4.2e-168 595.9 496 71.4
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.2e-167 594.3 704 57.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-167 594.3 704 57.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-167 594.0 702 57.7
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 2.7e-167 593.2 687 60.6
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 8.0e-167 591.7 580 63.3
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 5.2e-166 589.0 583 65.0
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.0e-165 587.0 519 64.9
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.6e-165 586.6 703 58.5
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 3.4e-165 586.3 582 64.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 7.5e-165 585.1 707 55.3
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.5e-165 585.1 616 61.2
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 9.8e-165 584.7 584 63.7
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 9.8e-165 584.7 792 52.0
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.3e-164 584.3 708 55.5
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 2.2e-164 583.6 519 64.4
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 2.2e-164 583.6 519 64.4
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.2e-164 583.6 569 64.1
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 2.8e-164 583.2 519 64.4
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 6.3e-164 582.0 519 64.2
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 5.4e-163 578.9 540 65.9
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 9.1e-163 578.2 658 60.8
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.2e-162 577.8 674 58.8
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.0e-161 574.7 504 69.6
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 5.0e-161 572.4 693 58.2
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.5e-160 570.9 735 51.7
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 7.2e-160 568.5 506 69.0
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 8.8e-158 561.6 582 61.7
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.5e-157 560.8 576 62.3
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.4e-157 559.7 546 64.8
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.4e-155 553.5 771 54.0
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.4e-155 553.5 707 56.7
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 7.0e-155 552.0 582 61.7
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.2e-151 541.2 700 54.0
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.6e-151 540.8 553 63.5
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.3e-150 537.0 575 58.3
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 6.8e-150 535.4 701 55.9
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 5.2e-142 509.2 575 61.6
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.3e-140 504.6 575 61.2
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 3.2e-139 500.0 499 62.3
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.3e-137 494.6 703 50.2
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.1e-134 485.0 605 55.0
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 9.9e-117 425.2 478 59.8
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.3e-113 414.8 325 68.9
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 7.3e-112 409.1 593 52.4
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.8e-111 406.4 293 72.0
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 2.1e-106 391.0 514 55.8
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 7.4e-104 382.5 566 49.3
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.5e-101 374.8 536 51.5
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.9e-92 344.0 210 78.1
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 9.0e-78 295.8 532 44.5
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 2.0e-72 278.1 544 40.8
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.7e-68 265.0 177 77.4
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.3e-65 254.6 233 57.5
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.7e-63 248.4 518 43.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 6.3e-63 246.5 516 40.1
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.5e-61 240.7 520 43.7
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 6.5e-60 236.5 269 61.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 9.4e-59 232.6 178 71.3
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 4.7e-58 230.3 348 49.7
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-57 228.8 306 58.5
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.5e-52 209.9 249 61.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.9e-44 184.5 378 45.2
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.0e-44 183.7 208 57.2
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 8.9e-25 119.8 69 79.7
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.4e-24 117.5 142 57.0
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 6.4e-23 113.6 88 64.8
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.0e-21 108.6 85 67.1
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 7.5e-16 90.1 271 39.9
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 3.7e-15 87.8 257 34.6
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 6.4e-15 87.0 231 32.9
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 6.4e-15 87.0 103 45.6
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 8.3e-15 86.7 98 53.1
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 1.4e-14 85.9 95 53.7
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 1.9e-14 85.5 87 63.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 7.1e-14 83.6 47 83.0
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 8.6e-12 76.6 98 50.0
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 1.2e-10 72.8 293 35.2
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 3.6e-10 71.2 79 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 8.4e-07 60.1 117 48.7
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 1.1e-06 59.7 85 41.2
PRCOL_00005761 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 4.1e-06 57.8 117 33.3


User provided reference genes

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