Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 6.8e-308 1060.1 634 100.0
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 6.1e-224 781.2 648 74.1
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 1.4e-212 743.4 641 74.3
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 4.6e-211 738.4 636 73.1
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.3e-207 726.1 644 71.0
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.7e-205 719.9 634 71.9
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 5.4e-204 714.9 635 72.3
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.6e-198 696.0 639 69.3
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.3e-197 693.7 640 71.1
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 8.3e-197 691.0 548 75.2
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.9e-196 689.9 640 71.1
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.9e-196 689.9 640 70.8
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.5e-195 685.6 638 71.3
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 1.3e-194 683.7 640 67.7
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 3.9e-194 682.2 637 69.7
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.6e-194 681.4 642 69.5
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.1e-191 674.1 638 69.1
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 1.3e-189 667.2 690 63.3
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 3.8e-189 665.6 634 67.2
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.4e-188 662.9 643 68.7
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.5e-182 643.7 641 64.9
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.0e-182 643.3 640 64.7
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 7.6e-182 641.3 634 68.0
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 6.4e-181 638.3 654 66.1
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.4e-180 637.1 646 65.5
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 2.1e-179 633.3 566 69.4
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 3.0e-178 629.4 640 62.0
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 6.6e-178 628.2 634 65.6
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.5e-177 627.1 647 65.8
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.8e-175 620.2 639 61.8
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 4.0e-175 619.0 641 64.4
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 6.9e-175 618.2 491 74.7
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 9.0e-175 617.8 641 64.0
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 3.4e-174 615.9 641 63.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.1e-172 610.9 568 63.2
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.1e-172 610.9 637 64.8
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.4e-172 610.5 645 63.9
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 4.2e-172 609.0 638 66.8
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.6e-171 607.1 640 62.0
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.1e-171 606.7 642 63.4
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 7.9e-171 604.7 633 64.0
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.8e-170 603.6 661 62.0
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 3.0e-170 602.8 634 66.1
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.3e-169 599.4 639 62.0
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 4.3e-169 599.0 641 63.8
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 9.6e-169 597.8 641 63.2
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.3e-168 597.4 638 64.3
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.7e-168 595.9 655 63.8
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 4.8e-168 595.5 644 63.4
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.8e-167 593.6 638 59.7
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 9.0e-167 591.3 644 61.0
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 2.6e-166 589.7 639 62.9
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 7.6e-166 588.2 676 59.5
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.0e-165 587.8 648 59.7
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.8e-165 585.9 532 64.5
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.8e-165 585.9 641 64.3
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.4e-164 583.9 564 62.2
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 2.5e-164 583.2 548 67.9
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 2.7e-163 579.7 668 62.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 3.5e-163 579.3 589 62.5
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 7.9e-163 578.2 633 64.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.3e-162 577.4 640 57.8
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-162 577.4 636 63.4
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.8e-162 577.0 578 65.7
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.1e-161 574.3 569 64.0
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.5e-161 573.2 519 67.4
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 4.3e-161 572.4 642 58.3
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.6e-160 570.5 677 56.4
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.8e-160 569.7 587 62.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.8e-160 569.7 640 62.0
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 3.7e-160 569.3 572 65.4
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.4e-159 567.4 542 67.7
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.8e-159 567.0 374 80.2
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 5.3e-159 565.5 638 62.4
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.5e-158 563.9 460 69.1
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.7e-155 553.1 640 60.2
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 7.9e-155 551.6 690 57.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.5e-153 547.4 482 69.7
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 6.9e-151 538.5 669 55.8
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 9.0e-151 538.1 639 60.4
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 3.8e-149 532.7 548 58.8
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 2.5e-148 530.0 639 60.3
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 3.0e-146 523.1 512 62.7
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 6.7e-146 521.9 559 57.2
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.5e-145 520.8 549 61.7
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.8e-143 513.8 651 54.4
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 7.9e-139 498.4 700 50.7
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.0e-138 498.0 664 57.1
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 3.0e-138 496.5 372 79.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 4.8e-136 489.2 647 59.5
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 6.3e-136 488.8 642 57.5
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.2e-133 480.3 651 55.9
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.5e-132 477.6 532 58.1
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 5.5e-132 475.7 642 56.4
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 1.6e-131 474.2 642 56.4
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.7e-131 473.4 647 55.8
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.5e-129 467.6 637 54.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 4.8e-128 462.6 584 54.3
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.0e-125 454.9 351 70.1
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 6.1e-123 445.7 601 52.1
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.0e-122 444.9 486 57.2
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.4e-122 444.5 655 53.7
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 8.8e-122 441.8 635 53.5
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 5.7e-121 439.1 547 54.7
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.8e-120 436.8 373 72.7
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.8e-120 436.8 373 72.7
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-119 434.1 373 72.4
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 3.1e-119 433.3 634 46.7
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.1e-119 433.0 373 72.1
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.7e-118 430.3 533 55.7
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 2.9e-117 426.8 647 53.5
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.2e-115 421.4 646 52.5
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 3.6e-115 419.9 540 54.4
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 9.8e-105 385.2 316 76.6
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 5.4e-95 352.8 338 57.4
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.7e-94 350.5 476 52.9
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 2.5e-92 344.0 538 46.8
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 6.2e-91 339.3 327 59.0
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.3e-90 337.4 333 57.1
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.4e-87 328.2 469 51.6
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 9.6e-76 288.9 391 46.3
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 2.4e-74 284.3 479 42.4
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.6e-73 280.8 465 42.4
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.4e-71 275.0 339 49.3
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 2.8e-59 234.2 354 46.3
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.7e-56 224.9 558 39.1
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.9e-56 224.2 168 70.2
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 7.1e-55 219.5 270 61.9
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.3e-53 214.5 310 45.5
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.6e-49 201.1 337 49.3
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.3e-45 188.0 134 75.4
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.4e-41 174.1 190 56.3
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 5.9e-41 173.3 103 81.6
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.2e-30 139.0 355 33.2
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 6.7e-29 133.3 151 57.0
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.5e-28 131.3 242 39.7
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 2.2e-27 128.3 330 32.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.0e-20 105.1 318 28.0
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 2.2e-19 101.7 61 83.6
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 8.2e-19 99.8 88 55.7
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 2.9e-16 91.3 154 57.8
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 4.2e-15 87.4 226 46.5
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.7e-14 84.7 53 73.6
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.6e-12 78.2 41 90.2
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.3e-12 77.8 131 45.8
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.8e-11 73.9 139 61.9
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 3.8e-08 64.3 43 72.1
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.6e-06 58.9 207 47.3


User provided reference genes

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