Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02008 Eucalyptus grandis HOM05D003395 ORTHO05D004087 4.5e-94 347.8 166 100.0
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.1e-87 326.6 159 98.1
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 7.0e-79 297.4 163 86.5
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 1.3e-77 293.1 159 86.2
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 1.3e-77 293.1 159 86.2
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 3.0e-77 292.0 159 86.8
Eucgr.K01999 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.9e-77 291.6 159 89.3
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 6.6e-77 290.8 159 87.4
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 6.6e-77 290.8 159 86.8
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 7.3e-76 287.3 159 85.5
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 3.6e-75 285.0 159 83.6
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 6.2e-75 284.3 157 85.4
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 6.2e-75 284.3 159 85.5
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.1e-74 283.5 159 84.3
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 1.1e-74 283.5 159 83.6
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 2.3e-74 282.3 159 83.0
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 3.1e-74 282.0 159 83.0
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 3.1e-74 282.0 159 83.6
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 4.0e-74 281.6 159 83.0
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 5.2e-74 281.2 159 81.8
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 5.2e-74 281.2 159 81.8
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 5.2e-74 281.2 159 81.8
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 5.2e-74 281.2 159 83.6
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 5.2e-74 281.2 159 83.0
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 6.8e-74 280.8 159 82.4
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 6.8e-74 280.8 157 84.1
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 1.2e-73 280.0 159 83.6
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 1.5e-73 279.6 159 84.3
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.5e-73 279.6 159 83.0
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 1.5e-73 279.6 159 82.4
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 2.0e-73 279.3 159 83.0
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 4.4e-73 278.1 159 81.8
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 4.4e-73 278.1 157 84.1
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 4.4e-73 278.1 159 81.1
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 5.8e-73 277.7 159 82.4
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 5.8e-73 277.7 157 81.5
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 5.8e-73 277.7 159 80.5
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 7.5e-73 277.3 159 83.0
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 9.8e-73 276.9 159 81.1
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.3e-72 276.6 159 81.1
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 1.3e-72 276.6 159 81.1
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 1.7e-72 276.2 159 83.0
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 2.2e-72 275.8 157 81.5
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 2.9e-72 275.4 159 80.5
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 2.9e-72 275.4 159 83.6
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 2.9e-72 275.4 159 82.4
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 4.9e-72 274.6 157 83.4
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 4.9e-72 274.6 159 81.8
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.9e-72 274.6 159 81.8
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.9e-72 274.6 159 81.8
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 6.4e-72 274.2 159 82.4
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 8.3e-72 273.9 159 79.9
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 1.4e-71 273.1 157 80.9
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 1.4e-71 273.1 157 82.8
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 1.9e-71 272.7 159 79.9
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 3.2e-71 271.9 159 80.5
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 4.1e-71 271.6 157 80.3
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 4.1e-71 271.6 157 80.3
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 4.1e-71 271.6 157 82.2
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 9.2e-71 270.4 159 78.6
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 9.2e-71 270.4 159 79.2
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 9.2e-71 270.4 159 79.2
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 9.2e-71 270.4 157 81.5
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 9.2e-71 270.4 157 79.6
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 1.2e-70 270.0 159 81.1
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 1.6e-70 269.6 159 81.1
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.6e-70 269.6 159 80.5
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 1.0e-69 266.9 159 79.2
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.3e-69 266.5 157 79.0
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 1.3e-69 266.5 157 78.3
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 3.0e-69 265.4 159 80.5
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 5.1e-69 264.6 157 79.6
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 5.1e-69 264.6 157 79.6
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 5.1e-69 264.6 159 78.0
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 6.6e-69 264.2 159 77.4
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 8.6e-69 263.8 159 75.5
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 8.6e-69 263.8 150 82.0
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 1.1e-68 263.5 157 80.3
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 1.5e-68 263.1 157 77.7
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 1.5e-68 263.1 157 77.7
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 2.5e-68 262.3 157 79.0
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 2.5e-68 262.3 157 79.0
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 2.5e-68 262.3 157 79.6
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 2.5e-68 262.3 157 79.6
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 2.5e-68 262.3 157 79.6
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 3.3e-68 261.9 157 79.0
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 3.3e-68 261.9 157 79.6
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 3.3e-68 261.9 150 80.7
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 3.3e-68 261.9 157 79.6
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 4.3e-68 261.5 158 79.7
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 7.3e-68 260.8 159 77.4
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 9.5e-68 260.4 157 76.4
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 1.2e-67 260.0 157 79.0
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.6e-67 259.6 159 78.6
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 2.8e-67 258.8 159 76.7
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 4.7e-67 258.1 158 78.5
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 1.1e-66 256.9 157 77.7
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 1.1e-66 256.9 150 77.3
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 1.4e-66 256.5 158 77.2
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 1.4e-66 256.5 158 77.2
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 1.4e-66 256.5 158 77.2
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 1.4e-66 256.5 157 76.4
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 2.3e-66 255.8 158 79.1
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 6.8e-66 254.2 157 77.1
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.2e-65 253.4 158 77.2
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.2e-65 253.4 158 77.2
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 3.4e-65 251.9 150 78.7
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 1.3e-64 250.0 161 76.4
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 8.3e-64 247.3 150 76.7
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 1.1e-63 246.9 157 75.2
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 2.4e-63 245.7 157 72.6
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 5.6e-60 234.6 157 70.7
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 4.7e-59 231.5 157 75.8
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 2.4e-58 229.2 156 67.9
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 4.0e-58 228.4 159 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 3.8e-56 221.9 159 66.0
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.8e-56 221.9 157 69.4
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 1.2e-54 216.9 159 63.5
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 1.5e-52 209.9 160 62.5
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.9e-52 209.5 159 67.3
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 1.6e-51 206.5 121 79.3
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 6.9e-50 201.1 117 81.2
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 1.5e-49 199.9 147 61.2
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 5.8e-49 198.0 158 64.6
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 9.9e-49 197.2 120 76.7
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 3.2e-47 192.2 258 43.8
FvH4_6g38800 Fragaria vesca HOM05D003395 ORTHO05D004087 8.7e-45 184.1 148 58.8
Haze_07832 Corylus avellana HOM05D003395 ORTHO05D004087 1.2e-41 173.7 115 74.8
PGSC0003DMG401030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 6.4e-40 167.9 90 86.7
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.6e-38 163.3 100 81.0
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 1.0e-37 160.6 98 76.5
RcHm_v2.0_Chr2g0152381 Rosa chinensis HOM05D003395 ORTHO05D004087 5.6e-36 154.8 111 64.9
Lsat_1_v5_gn_4_163840 Lactuca sativa HOM05D003395 ORTHO05D004087 6.2e-35 151.4 88 79.5
Lsat_1_v5_gn_4_147041 Lactuca sativa HOM05D003395 ORTHO05D004087 2.0e-33 146.4 88 77.3
SEGI_38355 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.3e-29 133.7 89 69.7
FAN09G3727 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-22 110.5 81 58.0
Actinidia17662 Actinidia chinensis HOM05D003395 ORTHO05D004087 7.7e-17 91.3 48 83.3
CAN.G4526.1 Capsicum annuum HOM05D003395 ORTHO05D004087 2.5e-12 76.3 43 81.4
PRCOL_00003855 Prasinoderma coloniale HOM05D003395 ORTHO05D004087 7.4e-12 74.7 144 34.0
Eucgr.E01623 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.7e-11 73.6 41 85.4
Cre17.g717800 Chlamydomonas reinhardtii HOM05D003395 ORTHO05D004087 1.5e-09 67.0 159 27.0
CARHR167540 Cardamine hirsuta HOM05D003395 ORTHO05D004087 2.6e-09 66.2 41 73.2
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.0e-08 64.3 41 73.2
SHI40123 Sapria himalayana HOM05D003395 ORTHO05D037522 4.7e-06 55.5 53 56.6
Lsat_1_v5_gn_1_62780 Lactuca sativa HOM05D003395 ORTHO05D004087 7.9e-06 54.7 60 50.0


User provided reference genes

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