Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 2.2e-238 828.6 415 100.0
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 2.9e-190 668.7 416 80.3
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 3.9e-187 658.3 415 78.6
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.2e-185 652.5 431 75.2
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.2e-185 652.5 416 79.1
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.8e-185 651.4 412 78.6
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 8.2e-185 650.6 399 79.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-184 650.2 391 81.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.4e-184 649.8 387 80.6
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.1e-184 648.7 404 79.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 3.1e-184 648.7 417 77.2
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.3e-184 647.9 415 78.3
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 5.3e-184 647.9 413 78.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.9e-184 647.5 415 78.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 6.9e-184 647.5 416 79.1
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.0e-184 647.1 415 78.1
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 9.0e-184 647.1 421 77.2
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-183 646.7 415 78.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.2e-183 646.7 409 77.8
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.2e-183 646.7 351 86.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.0e-183 646.0 417 77.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 4.5e-183 644.8 415 78.1
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 4.5e-183 644.8 349 88.8
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.5e-183 644.8 353 86.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 5.9e-183 644.4 389 80.2
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.0e-182 643.7 387 80.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.3e-182 643.3 415 77.3
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.7e-182 642.9 352 87.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.2e-182 642.5 419 77.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.8e-182 641.7 350 85.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.8e-182 641.7 393 79.6
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.8e-182 641.7 357 85.7
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 5.0e-182 641.3 416 78.4
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 6.5e-182 641.0 409 77.3
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.5e-182 640.6 419 76.8
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.1e-181 640.2 406 77.3
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.1e-181 640.2 405 78.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.4e-181 639.8 354 85.3
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.4e-181 639.8 354 87.6
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.9e-181 639.4 398 81.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.5e-181 639.0 393 79.6
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 4.2e-181 638.3 352 86.1
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 7.2e-181 637.5 351 86.0
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 9.4e-181 637.1 354 84.7
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.6e-180 636.3 345 87.5
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.6e-180 636.3 412 77.4
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.1e-180 636.0 374 82.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 4.6e-180 634.8 415 75.2
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 6.1e-180 634.4 410 76.8
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.1e-180 634.4 416 76.2
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.0e-179 633.6 412 77.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.0e-179 633.6 347 86.5
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.4e-179 633.3 411 77.4
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.4e-179 633.3 354 84.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.8e-179 632.9 415 76.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 2.3e-179 632.5 400 79.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 2.3e-179 632.5 400 79.0
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 2.3e-179 632.5 424 75.5
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.3e-179 632.5 413 76.5
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.0e-179 632.1 344 86.3
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 3.9e-179 631.7 371 81.4
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 3.9e-179 631.7 413 76.8
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 8.8e-179 630.6 391 78.5
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 8.8e-179 630.6 409 76.3
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-178 630.2 371 81.1
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.1e-178 630.2 344 86.0
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.5e-178 629.8 408 75.7
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.5e-178 629.8 412 77.2
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 2.0e-178 629.4 353 84.1
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 4.3e-178 628.2 391 78.3
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 5.7e-178 627.9 344 85.8
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 7.4e-178 627.5 417 75.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.2e-177 625.9 403 75.9
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.8e-177 625.5 412 76.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 4.8e-177 624.8 410 76.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 8.2e-177 624.0 372 81.2
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.1e-176 622.1 353 83.3
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 6.9e-176 620.9 400 76.2
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 9.1e-176 620.5 346 85.5
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.2e-175 620.2 400 76.0
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 4.5e-175 618.2 411 75.7
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.3e-174 616.7 347 83.6
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.3e-174 616.7 415 74.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.9e-174 615.5 348 84.2
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 6.5e-174 614.4 346 84.4
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.1e-173 613.6 411 74.2
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.2e-173 611.7 344 85.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.2e-172 610.1 403 77.2
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.2e-172 610.1 417 74.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.6e-172 609.8 308 92.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 2.1e-172 609.4 469 66.7
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.7e-172 609.0 418 73.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 4.7e-172 608.2 430 73.3
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.0e-171 607.1 355 79.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.0e-171 605.5 395 76.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 3.9e-171 605.1 412 73.5
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.4e-170 601.7 390 76.7
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.8e-169 598.2 413 73.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-168 596.3 301 91.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.2e-167 593.6 349 80.8
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.6e-167 593.2 402 73.9
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.9e-167 591.3 406 72.7
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.0e-166 590.5 323 86.4
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.0e-166 590.5 420 71.2
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.4e-163 580.1 394 75.9
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.3e-163 579.3 368 77.4
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.3e-163 579.3 368 77.4
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.5e-162 576.6 383 73.6
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.8e-161 571.6 345 79.7
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.1e-160 568.9 399 72.7
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 9.1e-160 567.4 350 77.7
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.7e-159 565.8 430 69.8
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.7e-159 565.8 350 80.6
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 6.1e-156 554.7 503 59.0
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.8e-153 545.8 551 54.6
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.3e-153 544.7 361 72.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.1e-152 542.3 564 55.1
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.7e-151 539.3 433 64.9
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.3e-150 537.0 343 74.6
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 8.5e-150 534.3 419 65.6
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 8.0e-148 527.7 303 79.5
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.2e-136 489.2 243 90.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 9.5e-133 477.6 351 67.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.6e-132 475.7 284 78.9
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.5e-130 468.0 353 68.0
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.2e-124 450.7 307 68.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 4.0e-123 445.7 351 61.3
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.2e-116 421.8 270 76.3
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 7.6e-114 414.8 262 79.4
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.9e-105 385.6 212 86.3
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 4.2e-104 382.5 345 55.9
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.2e-103 380.9 212 84.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.1e-103 380.2 315 59.4
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-97 360.9 242 74.0
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.9e-90 334.7 211 75.4
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.3e-89 334.3 288 54.5
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.6e-87 325.9 245 69.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.4e-67 260.4 127 92.9
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.1e-67 260.0 310 44.8
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.9e-67 258.8 323 42.4
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-66 257.7 329 42.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 7.7e-66 255.4 340 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.8e-65 253.1 317 43.2
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.8e-59 234.2 295 41.7
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 6.5e-57 225.7 179 65.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 5.5e-56 222.6 327 40.7
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.0e-50 204.1 247 42.1
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.6e-47 194.5 114 85.1
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.4e-46 191.4 155 64.5
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-30 137.9 92 76.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 6.6e-25 119.4 156 48.1
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.3e-24 116.7 55 90.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 4.4e-21 106.7 62 85.5
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 4.1e-19 100.1 111 54.1
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 7.0e-19 99.4 194 40.7
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.1e-16 92.0 93 59.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 8.0e-15 85.9 49 77.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 3.7e-12 77.0 33 93.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.6e-10 70.1 34 82.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 6.2e-07 59.7 31 77.4


User provided reference genes

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