Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 6.0e-227 790.4 379 100.0
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 8.2e-200 700.3 376 85.9
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 1.8e-199 699.1 377 85.1
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 7.2e-196 687.2 378 84.7
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 7.2e-196 687.2 379 85.2
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 7.2e-196 687.2 379 83.9
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.6e-195 684.9 379 82.8
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 3.6e-195 684.9 379 85.5
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.8e-194 682.6 377 84.1
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 2.6e-193 678.7 379 82.8
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 5.7e-193 677.6 379 83.1
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 2.2e-192 675.6 379 82.6
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 8.2e-192 673.7 379 82.8
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.4e-191 672.2 379 83.6
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 2.4e-191 672.2 379 81.8
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 3.1e-191 671.8 378 83.1
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 4.1e-191 671.4 379 82.6
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.0e-190 669.1 388 81.2
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.3e-189 666.4 379 81.8
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.7e-189 666.0 381 81.6
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.6e-187 659.4 379 80.7
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 8.0e-187 657.1 376 81.1
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.5e-185 652.9 380 79.5
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 3.4e-185 651.7 375 80.0
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 7.5e-185 650.6 379 79.9
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 6.3e-184 647.5 375 80.0
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 6.3e-184 647.5 375 80.0
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.1e-183 646.7 375 79.7
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 4.1e-183 644.8 375 79.5
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 4.1e-183 644.8 378 79.9
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 5.4e-183 644.4 379 78.6
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 7.0e-183 644.0 379 78.6
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 9.1e-183 643.7 375 79.2
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.2e-182 643.3 375 79.7
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 2.0e-182 642.5 380 78.4
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.0e-181 640.2 375 78.9
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.0e-181 640.2 375 78.9
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.0e-181 640.2 375 78.9
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.7e-181 639.4 375 79.2
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 2.2e-181 639.0 383 78.3
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 9.5e-180 633.6 382 79.6
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.6e-179 632.9 418 72.2
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 2.1e-179 632.5 375 76.0
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 2.8e-179 632.1 377 79.3
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 6.1e-179 630.9 377 79.3
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 6.1e-179 630.9 375 76.0
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 8.0e-179 630.6 377 78.2
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 1.8e-178 629.4 388 76.8
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 3.0e-178 628.6 378 78.6
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 6.8e-178 627.5 377 78.8
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 6.8e-178 627.5 381 76.9
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.2e-177 626.7 377 78.8
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.7e-176 622.9 381 74.5
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 2.4e-175 619.0 383 75.7
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 3.1e-175 618.6 380 76.1
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 5.4e-175 617.8 373 77.5
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.2e-174 616.7 341 82.7
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 2.9e-173 612.1 394 74.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 3.8e-173 611.7 361 80.6
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.1e-172 610.1 379 75.7
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.9e-172 609.4 374 74.3
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.9e-172 609.4 384 77.1
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 4.3e-172 608.2 379 76.0
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 7.3e-172 607.4 356 80.1
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 9.5e-172 607.1 379 75.5
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 6.1e-171 604.4 370 73.8
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.8e-170 600.9 379 74.4
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 3.4e-169 598.6 408 70.6
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 5.7e-169 597.8 339 81.4
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.9e-168 595.5 369 75.1
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 6.4e-168 594.3 331 83.7
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 8.3e-168 594.0 380 73.7
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 7.8e-166 587.4 383 73.9
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 1.3e-165 586.6 379 72.8
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.5e-164 583.2 384 72.7
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 3.3e-164 582.0 388 71.6
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 4.3e-164 581.6 379 72.6
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 2.3e-162 575.9 379 73.1
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 5.2e-162 574.7 368 72.8
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 5.2e-162 574.7 335 79.4
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 2.2e-160 569.3 380 71.8
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.9e-160 568.9 323 82.4
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 2.9e-160 568.9 378 70.9
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.4e-159 566.6 361 75.3
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 1.4e-159 566.6 379 71.0
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.2e-159 565.5 374 71.7
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 4.1e-159 565.1 369 73.2
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 7.0e-159 564.3 375 70.7
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 2.0e-158 562.8 335 78.8
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.3e-157 560.1 371 73.0
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 4.3e-156 555.1 369 71.3
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 5.6e-156 554.7 376 69.7
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 1.1e-154 550.4 376 69.1
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 1.4e-154 550.1 376 69.7
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 4.0e-154 548.5 376 68.9
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 6.8e-154 547.7 376 69.1
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.6e-153 545.8 377 69.5
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 7.5e-153 544.3 376 68.6
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.4e-151 538.1 379 68.1
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.1e-151 537.7 376 68.1
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 9.2e-151 537.3 368 70.9
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 9.2e-151 537.3 376 68.6
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 3.6e-147 525.4 281 85.4
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.1e-146 522.3 378 66.7
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.1e-146 522.3 378 66.7
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 7.6e-145 517.7 358 72.3
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 7.8e-142 507.7 379 66.0
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 5.6e-140 501.5 382 61.5
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 1.2e-139 500.4 379 67.0
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.6e-139 498.8 376 64.1
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 4.4e-137 491.9 253 89.3
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 2.8e-131 472.6 257 84.0
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 9.9e-129 464.2 390 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.3e-128 463.8 366 60.1
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.1e-124 450.7 253 79.8
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.9e-124 449.9 390 53.8
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.4e-122 443.0 281 74.4
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 6.9e-122 441.4 377 56.2
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 8.4e-120 434.5 385 54.5
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.0e-112 411.0 306 66.3
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.0e-110 401.7 378 56.1
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 6.7e-109 398.3 224 81.7
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 6.9e-98 361.7 309 58.3
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.3e-83 314.3 536 34.5
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 6.5e-80 302.0 219 68.5
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.7e-78 296.6 220 68.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.2e-75 287.0 213 68.1
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 6.3e-75 285.4 147 89.8
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.3e-72 277.7 144 88.9
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 8.0e-70 268.5 275 51.6
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 9.8e-68 261.5 368 39.1
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.0e-64 251.5 152 78.9
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 3.5e-57 226.5 134 75.4
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 5.9e-57 225.7 146 71.9
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.3e-51 208.0 153 62.7
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 3.4e-44 183.3 111 71.2
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.1e-39 168.3 287 34.8
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.4e-34 150.6 92 73.9
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 7.3e-31 139.0 146 54.8
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.1e-29 135.2 280 29.3
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.8e-22 110.5 57 80.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 1.4e-21 108.2 59 83.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.2e-20 105.1 66 72.7
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 8.7e-16 89.0 52 73.1
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.1e-13 82.0 102 45.1
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.0e-13 80.1 57 66.7
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 75.0
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 1.2e-09 68.6 37 75.7
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 4.8e-06 56.6 116 28.4


User provided reference genes

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