Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.8e-87 323.9 160 100.0
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-83 312.8 158 97.5
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-69 265.8 150 89.3
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.9e-69 264.6 150 90.0
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.4e-68 263.1 150 89.3
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 5.4e-60 234.6 150 79.3
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 7.0e-60 234.2 150 79.3
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 9.2e-60 233.8 150 78.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 4.6e-59 231.5 150 77.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.9e-58 228.4 150 77.3
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 5.1e-58 228.0 150 76.7
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 5.1e-58 228.0 150 76.0
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 6.6e-58 227.6 150 76.7
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.9e-57 226.1 150 76.0
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 3.3e-57 225.3 150 76.7
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 5.6e-57 224.6 150 76.0
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 9.5e-57 223.8 150 74.0
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.2e-56 223.4 150 74.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 2.8e-56 222.2 150 74.0
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.8e-56 222.2 150 74.7
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.6e-56 221.9 150 76.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.6e-56 221.9 150 73.3
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 8.1e-56 220.7 150 76.0
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.1e-55 220.3 150 74.7
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.1e-55 220.3 150 75.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.1e-55 220.3 150 72.7
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.8e-55 219.5 150 75.3
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.3e-55 219.2 149 75.2
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.1e-55 218.8 150 74.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.0e-55 218.4 150 72.0
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.2e-55 218.0 150 71.3
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.0e-54 216.1 150 73.3
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.0e-54 216.1 150 71.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.6e-54 215.7 150 70.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.4e-54 214.9 150 70.7
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 5.8e-54 214.5 150 72.0
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 5.8e-54 214.5 150 72.0
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 7.5e-54 214.2 150 70.7
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 9.9e-54 213.8 150 70.0
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 9.9e-54 213.8 150 70.0
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.7e-53 213.0 150 68.0
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.2e-53 212.6 150 68.7
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.7e-53 211.8 150 70.7
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.4e-53 211.1 150 69.3
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 8.3e-53 210.7 150 70.0
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.1e-52 210.3 150 68.7
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 2.4e-52 209.1 150 69.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.2e-52 208.8 150 71.3
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 3.2e-52 208.8 150 68.7
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 4.1e-52 208.4 150 71.3
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 5.4e-52 208.0 150 68.0
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.2e-52 207.2 150 67.3
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.6e-51 206.5 150 67.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.7e-51 205.7 150 66.7
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 4.6e-51 204.9 150 67.3
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.3e-50 202.6 150 69.3
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 2.3e-50 202.6 150 67.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.0e-50 202.2 151 69.5
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.0e-50 202.2 151 69.5
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.9e-50 201.8 150 70.0
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 3.9e-50 201.8 150 68.0
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.1e-50 201.4 150 68.7
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 5.1e-50 201.4 150 69.3
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.1e-49 200.3 150 68.7
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 1.9e-49 199.5 149 67.1
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.9e-49 199.5 150 66.7
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 3.3e-49 198.7 150 67.3
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 4.3e-49 198.4 150 66.7
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 4.3e-49 198.4 150 66.0
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 4.3e-49 198.4 169 60.9
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.2e-48 196.8 133 72.2
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.2e-48 196.8 150 68.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 2.8e-48 195.7 150 68.0
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 3.6e-48 195.3 151 66.2
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 6.2e-48 194.5 150 64.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 6.2e-48 194.5 150 65.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.4e-47 193.4 140 68.6
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.4e-47 192.6 152 63.2
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 4.0e-47 191.8 150 62.7
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 6.8e-47 191.0 151 66.9
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 8.9e-47 190.7 151 66.9
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 8.9e-47 190.7 150 66.0
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.2e-46 190.3 209 52.6
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.2e-46 190.3 151 66.2
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.2e-46 190.3 150 67.3
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.5e-46 189.9 149 65.1
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 2.0e-46 189.5 140 67.1
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.6e-46 189.1 149 65.8
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-46 189.1 150 64.0
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-46 189.1 150 64.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.8e-46 188.0 127 72.4
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 9.9e-46 187.2 150 64.0
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.3e-45 186.8 150 63.3
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.7e-45 186.4 133 69.2
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.9e-45 185.7 150 63.3
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 2.9e-45 185.7 150 62.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 6.4e-45 184.5 149 62.4
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 2.4e-44 182.6 151 64.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 2.4e-44 182.6 147 65.3
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.2e-44 182.2 151 62.9
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.2e-44 182.2 150 62.0
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 5.4e-44 181.4 147 63.3
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.2e-43 180.3 132 71.2
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.7e-43 179.1 142 66.9
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 7.8e-43 177.6 150 60.7
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.0e-42 175.6 148 60.1
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.5e-41 173.3 159 57.9
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.9e-41 172.9 153 57.5
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.5e-41 172.6 150 59.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.5e-41 172.6 142 62.7
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.7e-40 168.3 144 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 6.2e-40 167.9 144 59.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 8.1e-40 167.5 144 58.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 4.0e-39 165.2 151 56.3
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 5.3e-39 164.9 150 61.3
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.2e-38 163.7 185 50.8
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.2e-38 163.7 151 56.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.2e-38 163.7 147 58.5
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 3.4e-38 162.2 144 57.6
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 8.4e-37 157.5 142 54.9
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.1e-36 157.1 128 61.7
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.6e-34 147.9 111 68.5
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 2.8e-32 142.5 146 55.5
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 8.1e-32 141.0 103 69.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.8e-31 139.8 99 72.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 8.4e-29 131.0 144 45.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.2e-28 129.0 104 64.4
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 7.1e-28 127.9 109 57.8
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 9.3e-28 127.5 109 58.7
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 7.9e-27 124.4 91 70.3
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.3e-26 123.6 79 74.7
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.9e-25 119.8 147 48.3
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 4.3e-25 118.6 147 46.9
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 2.8e-24 115.9 109 56.0
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 3.4e-22 109.0 137 46.7
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 2.5e-20 102.8 151 39.1
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 6.7e-18 94.7 141 37.6
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 2.4e-15 86.3 50 80.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 4.0e-15 85.5 123 38.2
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.4e-14 82.4 63 63.5
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.9e-12 76.6 62 61.3
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.5e-09 66.2 61 59.0
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.5e-09 66.2 61 59.0


User provided reference genes

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