Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 0.0e+00 1363.2 707 100.0
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.9e-229 799.7 711 63.7
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.1e-226 790.4 712 61.1
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 2.5e-226 789.3 710 61.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 3.3e-226 788.9 711 61.6
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.3e-226 788.9 713 62.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 5.6e-226 788.1 714 62.2
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.3e-226 787.7 714 62.2
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.0e-224 781.9 714 62.3
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.2e-223 780.4 712 61.7
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.4e-222 774.2 728 59.6
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.4e-221 771.5 714 60.9
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.2e-220 770.4 712 60.4
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.1e-220 769.6 712 60.4
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.1e-218 763.8 731 59.4
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.5e-218 763.5 729 60.1
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.9e-218 763.1 713 61.4
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 3.3e-218 762.3 717 60.4
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.6e-218 761.5 706 61.3
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.3e-218 761.1 714 61.8
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.1e-217 759.6 714 61.6
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 6.2e-217 758.1 708 60.3
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-216 756.1 714 61.1
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 9.0e-216 754.2 701 61.2
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 9.0e-216 754.2 719 59.0
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.4e-215 752.3 711 59.6
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.7e-214 750.0 718 59.7
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 2.2e-214 749.6 715 60.6
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 6.4e-214 748.0 711 59.5
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.4e-213 746.9 711 59.8
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.4e-213 746.1 712 59.6
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.2e-213 745.7 710 59.9
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 7.1e-213 744.6 736 58.3
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 9.3e-213 744.2 715 59.4
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.3e-211 740.3 704 59.2
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.3e-211 740.3 709 59.2
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.1e-210 737.3 713 59.6
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 5.6e-210 734.9 712 58.3
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.6e-209 733.4 710 57.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.1e-208 730.7 712 59.1
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.1e-208 730.7 719 57.6
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.4e-208 730.3 714 58.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.4e-207 725.7 710 57.5
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.6e-207 724.5 711 57.5
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 6.4e-206 721.5 705 57.7
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 1.4e-205 720.3 719 57.6
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.9e-205 719.9 711 58.1
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.2e-204 717.2 728 57.4
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 4.6e-204 715.3 718 57.0
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 4.6e-204 715.3 720 57.5
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.9e-204 714.5 712 58.4
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.9e-204 714.5 712 58.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.0e-203 714.1 722 57.3
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.0e-203 714.1 710 57.2
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.1e-203 711.8 711 57.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 7.4e-202 708.0 712 57.4
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.3e-201 707.2 711 57.2
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.3e-201 707.2 717 58.9
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.3e-201 707.2 709 57.4
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.6e-201 706.8 713 56.2
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 4.8e-201 705.3 713 56.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.4e-200 703.7 710 57.2
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.9e-198 696.0 711 57.1
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.4e-197 693.7 710 55.9
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 4.2e-197 692.2 714 56.6
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.3e-197 691.0 713 56.5
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 2.1e-196 689.9 713 54.8
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.6e-196 688.7 712 56.3
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 7.9e-196 688.0 713 56.1
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 3.0e-195 686.0 727 55.4
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 8.7e-195 684.5 713 56.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 2.4e-192 676.4 712 56.2
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 3.1e-192 676.0 715 55.1
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 3.1e-192 676.0 729 55.1
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 4.0e-192 675.6 715 54.4
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.2e-191 674.1 709 54.4
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.5e-191 673.7 716 53.9
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.6e-191 672.9 712 54.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 2.6e-191 672.9 716 54.5
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 5.8e-191 671.8 716 54.3
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 7.6e-191 671.4 715 55.7
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.7e-190 670.2 714 55.5
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 3.8e-190 669.1 716 54.1
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.4e-189 667.2 699 56.4
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 3.2e-189 666.0 718 56.4
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.1e-188 663.3 698 55.9
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 4.6e-188 662.1 716 53.5
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 4.6e-188 662.1 716 53.5
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 6.0e-188 661.8 717 53.1
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 6.0e-188 661.8 716 53.4
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 1.0e-187 661.0 716 53.8
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 3.0e-187 659.4 722 54.0
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 6.7e-187 658.3 715 53.6
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.5e-186 656.4 721 52.7
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.3e-186 656.0 711 54.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 7.4e-186 654.8 719 53.3
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.3e-185 654.1 716 53.1
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 4.8e-185 652.1 717 52.7
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.4e-184 649.8 867 46.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.8e-179 633.6 712 52.5
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 3.7e-177 625.9 712 52.2
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.4e-176 623.2 713 52.9
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 5.3e-176 622.1 724 52.3
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.2e-175 620.9 732 51.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.0e-175 620.2 701 53.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.3e-174 617.5 724 52.2
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 7.2e-173 611.7 722 52.8
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.1e-172 610.1 714 51.5
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 7.0e-168 595.1 712 50.1
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.0e-163 579.7 724 50.0
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 8.8e-163 578.2 717 50.6
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.3e-161 574.3 717 49.8
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 3.7e-161 572.8 720 50.0
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.1e-160 569.3 740 47.4
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 2.6e-159 566.6 646 52.8
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 4.5e-159 565.8 696 51.0
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 1.0e-158 564.7 729 49.2
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 5.0e-158 562.4 724 51.1
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.9e-157 560.5 707 49.5
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.7e-153 547.4 724 48.6
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 7.0e-152 542.0 715 48.7
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 3.0e-147 526.6 696 47.6
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 9.5e-141 505.0 737 46.8
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.3e-134 483.8 369 70.5
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-133 481.1 373 70.5
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.8e-123 447.6 741 42.1
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.3e-123 447.2 374 63.4
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.3e-123 447.2 374 63.4
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 3.7e-121 439.9 319 75.2
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.4e-121 439.1 697 44.2
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 7.0e-120 435.6 607 44.5
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.9e-113 412.9 321 69.8
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 5.2e-107 392.9 553 47.2
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 5.1e-94 349.7 739 37.1
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 5.6e-93 346.3 391 50.4
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 8.1e-92 342.4 755 37.9
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 4.0e-91 340.1 782 35.8
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.9e-89 334.0 730 36.3
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.2e-87 328.6 394 50.8
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.1e-83 315.5 481 43.7
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-77 295.4 635 38.0
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 9.6e-77 292.4 395 44.6
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 3.1e-59 234.2 571 34.0
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.7e-57 228.4 410 42.2
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.7e-52 210.7 350 42.0
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.4e-51 208.8 151 74.8
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 9.1e-51 206.1 548 31.4
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.9e-48 198.4 339 41.9
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.2e-48 197.2 348 37.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 8.0e-39 166.4 249 41.0
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 9.7e-37 159.5 261 40.2
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.3e-36 159.1 229 42.8
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.7e-31 141.4 153 54.2
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 5.2e-30 137.1 178 51.7
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 8.8e-30 136.3 439 26.7
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 4.1e-27 127.5 418 27.3
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.1e-24 119.4 69 88.4
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 5.5e-24 117.1 69 85.5
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 6.8e-22 110.2 393 28.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.0e-18 98.6 62 79.0
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.9e-17 94.4 57 86.0
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.3e-16 90.1 90 51.1
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 7.3e-16 90.1 76 53.9
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 2.8e-15 88.2 51 86.3
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.7e-15 87.4 91 51.6
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 6.1e-15 87.0 51 84.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 2.3e-14 85.1 57 75.4
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.8e-10 70.1 161 32.9
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.5e-08 65.1 349 23.2
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.2e-07 62.8 59 57.6
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 5.2e-06 57.4 426 24.9


User provided reference genes

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