Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02435 Eucalyptus grandis HOM05D024009 ORTHO05D193321 1.3e-122 443.0 215 100.0
Eucgr.L00771 Eucalyptus grandis HOM05D024009 ORTHO05D192159 7.9e-99 364.0 180 96.7
Eucgr.J02441 Eucalyptus grandis HOM05D024009 ORTHO05D191167 1.5e-57 226.9 161 71.4
Eucgr.J02434 Eucalyptus grandis HOM05D024009 ORTHO05D190992 1.2e-35 154.1 200 43.5
Eucgr.L00769 Eucalyptus grandis HOM05D002204 ORTHO05D195003 9.9e-25 117.9 140 45.7
Eucgr.J02572 Eucalyptus grandis HOM05D002204 ORTHO05D002875 6.2e-11 72.0 170 31.2
Eucgr.L00876 Eucalyptus grandis HOM05D002204 ORTHO05D192642 6.9e-10 68.6 166 33.1
Lsat_1_v5_gn_3_67921 Lactuca sativa HOM05D002204 ORTHO05D002875 1.2e-09 67.8 163 32.5
AL6G35920 Arabidopsis lyrata HOM05D002204 ORTHO05D002875 2.6e-09 66.6 211 27.5
Lsat_1_v5_gn_2_660 Lactuca sativa HOM05D002204 ORTHO05D002875 3.4e-09 66.2 185 28.6
AT5G24360 Arabidopsis thaliana HOM05D002204 ORTHO05D002875 4.5e-09 65.9 211 27.0
Thhalv10003683m.g Eutrema salsugineum HOM05D002204 ORTHO05D002875 4.5e-09 65.9 210 27.1
CANSAT25G1037 Cannabis sativa HOM05D002204 ORTHO05D002875 9.9e-09 64.7 163 33.7
CARHR189060 Cardamine hirsuta HOM05D002204 ORTHO05D002875 9.9e-09 64.7 210 26.7
BraA06t26438Z Brassica rapa HOM05D002204 ORTHO05D002875 1.3e-08 64.3 210 26.7
MSTRG.24917 Avicennia marina HOM05D002204 ORTHO05D002875 1.7e-08 63.9 210 26.7
MD06G1007000 Malus domestica HOM05D002204 ORTHO05D002875 1.7e-08 63.9 185 28.1
Prupe.5G008100 Prunus persica HOM05D002204 ORTHO05D002875 1.7e-08 63.9 185 29.7
RcHm_v2.0_Chr2g0096971 Rosa chinensis HOM05D002204 ORTHO05D002875 1.7e-08 63.9 163 31.9
Eucgr.J02548 Eucalyptus grandis HOM05D002204 ORTHO05D002875 2.2e-08 63.5 146 32.2
Nn5g31015 Nelumbo nucifera HOM05D002204 ORTHO05D002875 2.2e-08 63.5 157 33.1
BcaNung02038 Brassica carinata HOM05D002204 ORTHO05D002875 2.9e-08 63.2 185 27.6
A06p35180 Brassica napus HOM05D002204 ORTHO05D002875 2.9e-08 63.2 210 26.7
Carub.0006s2220 Capsella rubella HOM05D002204 ORTHO05D002875 2.9e-08 63.2 210 26.2
Eucgr.J02541 Eucalyptus grandis HOM05D002204 ORTHO05D002875 2.9e-08 63.2 158 32.9
AUR62003738 Chenopodium quinoa HOM05D002204 ORTHO05D002875 3.8e-08 62.8 163 32.5
AUR62016567 Chenopodium quinoa HOM05D002204 ORTHO05D002875 3.8e-08 62.8 163 32.5
FAN08G2280 Fragaria x ananassa HOM05D002204 ORTHO05D002875 3.8e-08 62.8 211 26.5
Ah.11g041810 Amaranthus hybridus HOM05D002204 ORTHO05D002875 4.9e-08 62.4 158 31.6
C07p43380 Brassica napus HOM05D002204 ORTHO05D002875 4.9e-08 62.4 210 26.7
BolC7t44865H Brassica oleracea HOM05D002204 ORTHO05D002875 4.9e-08 62.4 210 26.7
Potri.005G254000 Populus trichocarpa HOM05D002204 ORTHO05D002875 8.4e-08 61.6 211 28.0
Sp2g22960 Schrenkiella parvula HOM05D002204 ORTHO05D002875 8.4e-08 61.6 211 27.5
FAN19G2449 Fragaria x ananassa HOM05D002204 ORTHO05D002875 1.1e-07 61.2 163 31.9
Hma1.2p1_0085F.1_g044540 Hydrangea macrophylla HOM05D002204 ORTHO05D002875 1.1e-07 61.2 161 28.6
THA.LOC104813183 Tarenaya hassleriana HOM05D002204 ORTHO05D002875 1.1e-07 61.2 185 27.0
CANSAT35G2005 Cannabis sativa HOM05D002204 ORTHO05D002875 1.4e-07 60.8 211 27.0
Cpa.g.sc26.160 Carica papaya HOM05D002204 ORTHO05D002875 1.4e-07 60.8 185 27.6
FAN23G0147 Fragaria x ananassa HOM05D002204 ORTHO05D002875 1.4e-07 60.8 163 31.9
Manes.05G125100 Manihot esculenta HOM05D002204 ORTHO05D002875 1.4e-07 60.8 211 27.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.9e-07 60.5 210 26.7
DCAR_002960 Daucus carota HOM05D002204 ORTHO05D002875 1.9e-07 60.5 165 29.7
Eucgr.J02546 Eucalyptus grandis HOM05D002204 ORTHO05D002875 1.9e-07 60.5 163 30.1
FAN04G0648 Fragaria x ananassa HOM05D002204 ORTHO05D002875 1.9e-07 60.5 211 26.1
Hund01790 Selenicereus undatus HOM05D002204 ORTHO05D002875 1.9e-07 60.5 165 31.5
arahy.Tifrunner.gnm1.ann1.770S43 Arachis hypogaea HOM05D002204 ORTHO05D002875 2.4e-07 60.1 163 29.4
arahy.Tifrunner.gnm1.ann1.9UP1GZ Arachis hypogaea HOM05D002204 ORTHO05D002875 2.4e-07 60.1 163 29.4
AUR62035151 Chenopodium quinoa HOM05D002204 ORTHO05D002875 2.4e-07 60.1 158 31.0
FAN26G2172 Fragaria x ananassa HOM05D002204 ORTHO05D002875 2.4e-07 60.1 163 31.9
Thecc.08G063100 Theobroma cacao HOM05D002204 ORTHO05D002875 2.4e-07 60.1 185 27.0
EL10Ac1g01902 Beta vulgaris HOM05D002204 ORTHO05D002875 3.2e-07 59.7 152 32.9
ECA238G1625 Erigeron canadensis HOM05D002204 ORTHO05D002875 3.2e-07 59.7 158 30.4
FAN28G1076 Fragaria x ananassa HOM05D002204 ORTHO05D002875 3.2e-07 59.7 163 31.9
Sabra05G0197000 Salix brachista HOM05D002204 ORTHO05D002875 3.2e-07 59.7 144 30.6
TWI36G0160 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 3.2e-07 59.7 185 27.6
Ca_02845_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 4.2e-07 59.3 165 30.9
Eucgr.C01995 Eucalyptus grandis HOM05D002204 ORTHO05D002875 4.2e-07 59.3 164 29.3
Eucgr.F00612 Eucalyptus grandis HOM05D002204 ORTHO05D002875 4.2e-07 59.3 168 28.6
Eucgr.J02544 Eucalyptus grandis HOM05D002204 ORTHO05D002875 4.2e-07 59.3 160 30.6
FvH4_5g25750 Fragaria vesca HOM05D002204 ORTHO05D002875 4.2e-07 59.3 211 26.1
FAN18G1593 Fragaria x ananassa HOM05D000020 ORTHO05D010558 4.2e-07 59.3 211 26.1
RcHm_v2.0_Chr7g0216101 Rosa chinensis HOM05D002204 ORTHO05D002875 4.2e-07 59.3 211 26.1
TWI56G0036 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 4.2e-07 59.3 163 28.2
CsaV3_6G047890 Cucumis sativus L. HOM05D002204 ORTHO05D002875 5.5e-07 58.9 185 28.1
Duzib116G0792 Durio zibethinus HOM05D002204 ORTHO05D002875 5.5e-07 58.9 211 26.5
MCO05G633 Micromonas commoda HOM05D002204 ORTHO05D002875 5.5e-07 58.9 144 31.9
PGR102G3164 Punica granatum HOM05D002204 ORTHO05D002875 5.5e-07 58.9 176 29.5
Aa31LG8G14810 Aethionema arabicum HOM05D002204 ORTHO05D002875 7.1e-07 58.5 163 30.7
Eucgr.C02029 Eucalyptus grandis HOM05D002204 ORTHO05D002875 7.1e-07 58.5 164 33.5
QL02p015199 Quercus lobata HOM05D002204 ORTHO05D002875 7.1e-07 58.5 211 26.1
Sc07g0001410 Simmondsia chinensis HOM05D002204 ORTHO05D002875 7.1e-07 58.5 163 28.2
GSVIVG01022298001 Vitis vinifera HOM05D002204 ORTHO05D002875 7.1e-07 58.5 163 28.2
C03p58450 Brassica napus HOM05D002204 ORTHO05D002875 9.3e-07 58.2 163 31.3
ClCG01G020930 Citrullus lanatus HOM05D002204 ORTHO05D002875 9.3e-07 58.2 159 29.6
ECA246G1616 Erigeron canadensis HOM05D002204 ORTHO05D000001 9.3e-07 58.2 159 29.6
Eucgr.F00613 Eucalyptus grandis HOM05D002204 ORTHO05D002875 9.3e-07 58.2 168 29.2
FAN13G3236 Fragaria x ananassa HOM05D002204 ORTHO05D002875 9.3e-07 58.2 158 27.8
HPP92_022537 Vanilla planifolia HOM05D002204 ORTHO05D002875 9.3e-07 58.2 189 27.5
BraA06t26326Z Brassica rapa HOM05D002204 ORTHO05D002875 1.2e-06 57.8 163 31.3
A06p33930 Brassica napus HOM05D002204 ORTHO05D002875 1.6e-06 57.4 163 31.3
Ciclev10027213m.g Citrus clementina HOM05D002204 ORTHO05D002875 1.6e-06 57.4 161 32.3
Lj2C501T12 Lonicera japonica HOM05D002204 ORTHO05D002875 1.6e-06 57.4 150 29.3
Lj4g0027136 Lotus japonicus HOM05D002204 ORTHO05D002875 1.6e-06 57.4 163 30.7
arahy.Tifrunner.gnm1.ann1.HBXX55 Arachis hypogaea HOM05D002204 ORTHO05D002875 2.1e-06 57.0 160 29.4
Glyma.11G087200 Glycine max HOM05D002204 ORTHO05D002875 2.1e-06 57.0 165 30.9
BcaB08g34739 Brassica carinata HOM05D002204 ORTHO05D002875 2.7e-06 56.6 163 30.7
Carub.0003s3158 Capsella rubella HOM05D002204 ORTHO05D002875 2.7e-06 56.6 163 29.4
CiPaw.07G135500 Carya illinoinensis HOM05D002204 ORTHO05D002875 2.7e-06 56.6 157 28.7
ClCG01G015810 Citrullus lanatus HOM05D002204 ORTHO05D002875 2.7e-06 56.6 163 31.3
MELO3C007978.2 Cucumis melo HOM05D002204 ORTHO05D002875 2.7e-06 56.6 185 28.1
Lj4A810T53 Lonicera japonica HOM05D002204 ORTHO05D002875 2.7e-06 56.6 158 29.7
Psat4g104640 Pisum sativum HOM05D002204 ORTHO05D002875 2.7e-06 56.6 165 30.3
Prupe.7G185000 Prunus persica HOM05D002204 ORTHO05D002875 2.7e-06 56.6 163 31.3
Glyma.09G197000 Glycine max HOM05D002204 ORTHO05D002875 3.5e-06 56.2 165 29.1
Gohir.A01G103100 Gossypium hirsutum HOM05D002204 ORTHO05D002875 3.5e-06 56.2 185 27.6
Oeu035852.2 Olea europaea HOM05D002204 ORTHO05D002875 3.5e-06 56.2 164 31.1
Sed0008668 Sechium edule HOM05D002204 ORTHO05D002875 3.5e-06 56.2 158 27.8
Sed0026219 Sechium edule HOM05D002467 ORTHO05D002875 3.5e-06 56.2 163 30.1
VMungo1215G3413 Vigna mungo HOM05D002204 ORTHO05D002875 3.5e-06 56.2 158 29.1
GSVIVG01013402001 Vitis vinifera HOM05D002204 ORTHO05D002875 3.5e-06 56.2 211 27.5
AL3G50450 Arabidopsis lyrata HOM05D002204 ORTHO05D002875 4.6e-06 55.8 163 30.7
MSTRG.995 Avicennia marina HOM05D002204 ORTHO05D002875 4.6e-06 55.8 185 28.6
BcaC01g02913 Brassica carinata HOM05D002204 ORTHO05D002875 4.6e-06 55.8 157 31.8
AUR62042588 Chenopodium quinoa HOM05D002204 ORTHO05D002875 4.6e-06 55.8 158 31.6
Eucgr.C02116 Eucalyptus grandis HOM05D002204 ORTHO05D002875 4.6e-06 55.8 170 27.6
Manes.01G156400 Manihot esculenta HOM05D002204 ORTHO05D002875 4.6e-06 55.8 163 28.2
Sp3g30880 Schrenkiella parvula HOM05D002204 ORTHO05D002875 4.6e-06 55.8 163 28.2
Haze_22837 Corylus avellana HOM05D002204 ORTHO05D002875 6.0e-06 55.5 152 30.9
Thhalv10022558m.g Eutrema salsugineum HOM05D002204 ORTHO05D002875 6.0e-06 55.5 163 31.3
HanXRQChr15g0482881 Helianthus annuus HOM05D002204 ORTHO05D002875 6.0e-06 55.5 173 28.9
Medtr8g073190 Medicago truncatula HOM05D002204 ORTHO05D002875 6.0e-06 55.5 165 30.3
Hund03595 Selenicereus undatus HOM05D002204 ORTHO05D002875 6.0e-06 55.5 161 29.8
CDE04G3410 Ceratophyllum demersum HOM05D002204 ORTHO05D002875 7.9e-06 55.1 206 26.2
Ca_24990_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 7.9e-06 55.1 163 28.8
DCAR_016789 Daucus carota HOM05D002204 ORTHO05D002875 7.9e-06 55.1 212 25.0
Migut.C00370 Erythranthe guttata HOM05D002204 ORTHO05D002875 7.9e-06 55.1 142 33.1
Gohir.A02G178800 Gossypium hirsutum HOM05D002204 ORTHO05D002875 7.9e-06 55.1 165 30.3
Gohir.D01G088400 Gossypium hirsutum HOM05D002204 ORTHO05D002875 7.9e-06 55.1 158 29.1
Gorai.002G114100 Gossypium raimondii HOM05D002204 ORTHO05D002875 7.9e-06 55.1 158 29.1
Lj2g0022367 Lotus japonicus HOM05D002204 ORTHO05D002875 7.9e-06 55.1 165 30.3
Oeu004299.1 Olea europaea HOM05D002204 ORTHO05D002875 7.9e-06 55.1 164 28.7
Rhsim10G0194000 Rhododendron simsii HOM05D002204 ORTHO05D002875 7.9e-06 55.1 157 27.4
SalBow7G2538 Salvia bowleyana HOM05D002204 ORTHO05D002875 7.9e-06 55.1 158 27.2
Solyc04g082620.3 Solanum lycopersicum HOM05D002204 ORTHO05D002875 7.9e-06 55.1 158 27.8
Sopen04g036250 Solanum pennellii HOM05D002204 ORTHO05D002875 7.9e-06 55.1 158 27.8


User provided reference genes

Program Settings