Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.9e-44 179.9 90 100.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-37 158.7 90 88.9
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.0e-37 156.8 90 87.8
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-36 156.0 90 86.7
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.9e-36 153.3 90 83.3
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.9e-36 153.3 90 83.3
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.5e-35 152.5 90 83.3
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 7.5e-35 150.2 90 82.2
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 7.5e-35 150.2 90 81.1
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 9.8e-35 149.8 90 81.1
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.3e-34 149.4 90 82.2
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 2.9e-34 148.3 86 83.7
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.7e-34 147.9 90 81.1
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.7e-34 147.9 90 81.1
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.1e-33 146.4 90 80.0
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.4e-33 146.0 90 82.2
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 2.4e-33 145.2 90 78.9
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.2e-33 144.8 90 78.9
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 3.2e-33 144.8 86 82.6
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 3.2e-33 144.8 90 78.9
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 5.4e-33 144.1 85 83.5
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 9.2e-33 143.3 90 77.8
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 9.2e-33 143.3 86 81.4
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-33 143.3 86 81.4
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-33 143.3 86 81.4
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-33 143.3 86 81.4
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 9.2e-33 143.3 86 81.4
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 9.2e-33 143.3 87 80.5
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.2e-32 142.9 85 82.4
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.2e-32 142.9 90 77.8
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.2e-32 142.9 90 78.9
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.2e-32 142.9 84 84.5
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.6e-32 142.5 90 76.7
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.1e-32 142.1 86 81.4
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.1e-32 142.1 86 80.2
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.1e-32 142.1 85 81.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 2.7e-32 141.7 85 81.2
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 2.7e-32 141.7 90 78.9
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 2.7e-32 141.7 90 77.8
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 3.5e-32 141.4 84 83.3
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.6e-32 141.0 85 81.2
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.6e-32 141.0 85 81.2
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.6e-32 141.0 85 81.2
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.0e-32 140.6 90 77.8
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 6.0e-32 140.6 90 77.8
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 6.0e-32 140.6 85 81.2
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 6.0e-32 140.6 85 81.2
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 7.8e-32 140.2 90 75.6
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.0e-31 139.8 85 81.2
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.0e-31 139.8 85 81.2
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.3e-31 139.4 85 80.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 3.0e-31 138.3 82 82.9
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 3.0e-31 138.3 85 78.8
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.9e-31 137.9 85 78.8
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 6.6e-31 137.1 85 78.8
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 6.6e-31 137.1 85 78.8
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.1e-30 136.3 90 75.6
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.1e-30 136.3 85 78.8
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.5e-30 136.0 90 75.6
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.5e-30 136.0 85 78.8
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 2.5e-30 135.2 85 77.6
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.3e-30 134.4 90 74.4
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.3e-30 134.4 90 74.4
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 5.6e-30 134.0 90 74.4
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 5.6e-30 134.0 83 79.5
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 7.3e-30 133.7 83 78.3
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 7.3e-30 133.7 83 78.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 7.3e-30 133.7 90 73.3
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 9.5e-30 133.3 85 78.8
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.2e-29 132.9 90 72.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.2e-29 132.9 81 80.2
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.6e-29 132.5 85 77.6
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.6e-29 132.5 92 71.7
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.6e-29 132.5 85 76.5
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.8e-29 131.7 85 76.5
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 2.8e-29 131.7 90 73.3
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.6e-29 131.3 85 76.5
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.6e-29 131.3 92 71.7
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 8.1e-29 130.2 90 74.4
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.1e-28 129.8 84 75.0
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.1e-28 129.8 90 72.2
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-28 129.4 111 63.1
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.4e-28 129.4 90 72.2
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.4e-28 129.4 90 72.2
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.8e-28 129.0 90 71.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.8e-28 129.0 90 72.2
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.8e-28 129.0 90 72.2
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.3e-28 128.6 90 73.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.1e-28 128.3 90 71.1
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 5.2e-28 127.5 90 70.0
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 6.8e-28 127.1 90 71.1
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 8.9e-28 126.7 90 71.1
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.2e-27 126.3 90 71.1
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.2e-27 126.3 90 71.1
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.5e-27 125.9 90 68.9
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.5e-27 125.9 90 68.9
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 2.0e-27 125.6 104 63.5
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.6e-27 125.2 90 70.0
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 2.6e-27 125.2 90 70.0
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.6e-27 125.2 90 70.0
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.6e-27 125.2 90 70.0
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 2.6e-27 125.2 86 72.1
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.6e-27 125.2 86 72.1
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.6e-27 125.2 86 72.1
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 2.6e-27 125.2 85 74.1
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 3.4e-27 124.8 90 71.1
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 3.4e-27 124.8 90 71.1
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.4e-27 124.4 90 68.9
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 5.8e-27 124.0 86 70.9
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 5.8e-27 124.0 86 70.9
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 5.8e-27 124.0 91 69.2
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.4e-25 118.6 90 66.7
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.2e-25 118.2 85 69.4
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 9.2e-25 116.7 79 72.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.1e-24 115.5 82 68.3
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 4.6e-24 114.4 90 65.6
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 3.0e-23 111.7 90 61.1
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.1e-23 110.9 83 63.9
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 5.1e-23 110.9 83 63.9
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 9.5e-22 106.7 76 68.4
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.7e-21 104.4 84 56.0
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.8e-20 102.4 76 63.2
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-19 99.8 90 53.3
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.5e-19 99.4 87 56.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.0e-19 99.0 85 51.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 7.6e-19 97.1 56 76.8
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.3e-18 96.3 94 57.4
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-18 95.9 86 61.6
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 3.8e-18 94.7 86 52.3
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.2e-16 89.7 90 53.3
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.2e-16 89.7 58 70.7
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.7e-16 88.6 90 50.0
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 4.3e-14 81.3 81 58.0
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.2e-13 79.7 96 53.1
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.6e-13 78.2 74 51.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 6.2e-13 77.4 57 68.4
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.8e-10 68.2 34 91.2
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-08 62.8 41 75.6
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 3.5e-08 61.6 33 81.8
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.3e-07 58.9 47 61.7
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.1e-07 57.8 34 76.5
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 1.5e-06 56.2 33 72.7


User provided reference genes

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