Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 0.0e+00 1462.6 753 100.0
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 0.0e+00 1123.6 747 77.9
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1122.5 741 76.2
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1117.1 747 75.1
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1112.1 748 75.5
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1109.4 747 74.4
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1103.2 748 75.3
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1097.0 748 75.1
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1096.3 748 74.6
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1094.7 748 74.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1091.6 751 74.4
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1091.3 754 74.5
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1090.5 746 74.7
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 0.0e+00 1090.1 749 74.9
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1089.7 756 74.2
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1087.0 749 75.0
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1086.6 752 74.2
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1083.2 748 73.4
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 753 74.5
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 749 74.5
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1079.3 746 74.1
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1078.9 750 72.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 0.0e+00 1076.2 747 73.9
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1076.2 749 74.1
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 0.0e+00 1075.5 745 74.1
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 753 73.8
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.0e-311 1072.8 750 73.3
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.5e-311 1072.4 754 73.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 2.1e-311 1072.0 745 74.2
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.6e-311 1070.8 749 72.8
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 759 73.8
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.1e-310 1067.4 747 73.2
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 8.7e-310 1066.6 746 72.1
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 1.9e-309 1065.4 760 73.2
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 4.3e-309 1064.3 746 72.0
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.1e-307 1059.7 753 72.6
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.5e-306 1055.8 748 72.2
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 4.5e-306 1054.3 751 72.7
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 5.8e-306 1053.9 747 73.0
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 9.9e-306 1053.1 751 72.3
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 9.9e-306 1053.1 753 73.2
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 749 72.0
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 751 72.7
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 9.3e-304 1046.6 745 71.3
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 738 72.0
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 7.9e-303 1043.5 751 72.4
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 3.0e-302 1041.6 792 69.2
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.9e-302 1041.2 748 71.3
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 3.9e-302 1041.2 749 70.6
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 5.1e-302 1040.8 750 71.9
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.5e-301 1039.3 780 69.6
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 751 71.2
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 747 71.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 752 72.6
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 789 68.2
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 747 71.6
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 9.6e-301 1036.6 750 70.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.8e-300 1035.0 747 71.6
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 2.8e-300 1035.0 746 71.7
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 3.7e-300 1034.6 753 72.1
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.7e-300 1034.6 749 72.1
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 6.2e-300 1033.9 753 72.1
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.1e-299 1033.1 749 71.0
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.4e-299 1032.7 749 70.9
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.8e-299 1032.3 749 71.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 9.0e-299 1030.0 753 71.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.0e-298 1028.9 789 68.1
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 5.8e-298 1027.3 740 72.6
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.6e-298 1026.9 749 72.0
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 3.8e-297 1024.6 701 75.5
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.2e-296 1021.5 746 70.0
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 7.1e-296 1020.4 750 71.3
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 9.3e-296 1020.0 751 69.6
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 744 70.3
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 6.0e-295 1017.3 773 69.1
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 5.1e-294 1014.2 748 70.5
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 5.1e-294 1014.2 747 69.7
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.1e-293 1013.1 749 70.6
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.8e-292 1008.4 747 68.3
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.7e-289 999.2 769 67.2
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.7e-287 991.9 655 76.8
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 3.5e-287 991.5 748 68.2
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 1.8e-286 989.2 748 68.9
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.3e-285 984.9 710 71.8
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 6.3e-284 980.7 749 67.8
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 6.5e-281 970.7 745 66.6
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.5e-277 959.5 658 74.5
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 2.5e-277 958.7 654 75.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 9.7e-277 956.8 711 68.6
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.4e-270 936.4 747 66.3
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.7e-268 928.3 698 67.8
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 7.5e-261 904.0 833 59.2
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 3.7e-244 848.6 748 59.0
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 9.1e-243 844.0 748 60.6
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.2e-238 828.2 538 78.6
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 8.0e-231 804.3 715 60.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 2.7e-226 789.3 503 79.9
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-221 773.9 602 65.8
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.1e-219 764.6 555 70.3
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 3.5e-218 762.3 553 70.5
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.9e-194 681.4 516 68.6
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 5.8e-181 638.6 607 56.2
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.1e-170 603.6 689 51.2
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.2e-165 587.8 420 69.5
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.9e-164 583.2 429 68.3
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 4.2e-163 579.3 464 64.4
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.3e-160 569.7 441 67.3
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.3e-140 504.6 416 61.8
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 9.8e-136 488.4 426 58.0
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.2e-133 481.5 428 57.9
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.2e-129 466.1 397 60.7
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 3.7e-127 459.9 370 64.6
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.6e-125 454.5 370 64.1
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 5.9e-117 426.0 505 49.1
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 3.3e-99 367.1 222 82.9
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 2.2e-95 354.4 261 73.6
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 2.9e-95 354.0 235 77.0
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.6e-72 277.7 230 63.0
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.2e-64 252.3 168 75.0
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 1.5e-64 251.9 160 78.8
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 5.7e-59 233.4 142 79.6
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 9.0e-57 226.1 139 83.5
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 5.9e-56 223.4 156 73.7
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.0e-55 222.6 300 44.3
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 2.1e-53 214.9 230 52.6
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.3e-47 195.7 131 74.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 2.9e-47 194.5 243 49.4
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.8e-44 185.3 101 88.1
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.3e-44 184.9 160 56.9
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 6.3e-42 176.8 143 59.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.1e-41 176.0 105 83.8
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 6.7e-36 156.8 128 65.6
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.0e-35 155.2 135 61.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 2.2e-31 141.7 292 33.6
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.6e-29 135.6 105 61.9
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.6e-29 135.6 93 72.0
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 8.8e-28 129.8 84 76.2
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 6.8e-20 103.6 182 39.6
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 4.4e-19 100.9 71 70.4
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.8e-17 95.5 141 47.5
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.6e-16 92.4 61 72.1
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.7e-16 91.7 52 84.6
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 1.0e-15 89.7 53 83.0
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.7e-15 89.0 61 68.9
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 3.8e-15 87.8 173 34.7
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 5.0e-15 87.4 52 82.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 1.9e-14 85.5 136 36.8
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 3.0e-12 78.2 44 84.1
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 3.0e-12 78.2 73 58.9
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.5e-08 64.3 36 86.1
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 1.5e-06 59.3 53 64.2


User provided reference genes

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