Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 0.0e+00 1210.3 671 100.0
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 3.7e-280 968.0 672 79.9
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.1e-279 966.5 671 80.0
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.1e-279 966.5 671 80.0
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 5.1e-277 957.6 672 79.0
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 5.1e-277 957.6 672 79.0
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 2.5e-276 955.3 669 79.1
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 7.3e-276 953.7 673 79.0
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 2.1e-275 952.2 672 79.0
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 2.1e-275 952.2 672 78.7
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 1.8e-274 949.1 672 77.8
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 8.9e-274 946.8 672 77.7
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.5e-273 946.0 672 78.3
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 1.3e-272 943.0 669 78.0
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 8.4e-272 940.3 672 78.4
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.1e-271 939.9 672 77.8
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.9e-271 939.1 672 77.7
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 2.4e-271 938.7 672 78.1
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 4.1e-271 937.9 672 77.5
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.1e-271 937.9 672 76.9
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 5.4e-271 937.6 672 77.1
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 2.1e-270 935.6 672 77.8
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 2.7e-270 935.3 670 78.1
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 1.3e-269 932.9 672 77.2
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 3.3e-268 928.3 745 64.4
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.3e-268 928.3 672 76.8
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 9.6e-268 926.8 670 76.3
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.2e-267 926.4 672 76.9
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 1.6e-267 926.0 672 75.9
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 4.7e-267 924.5 670 76.3
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 8.1e-267 923.7 672 77.1
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.4e-266 922.9 672 76.5
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 1.3e-264 916.4 672 75.4
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 1.7e-264 916.0 672 76.8
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 3.8e-264 914.8 671 77.2
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.1e-263 913.3 672 75.6
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 1.4e-263 912.9 672 76.6
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 2.4e-263 912.1 672 75.1
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.1e-262 909.1 680 74.1
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 2.7e-262 908.7 673 74.6
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 4.6e-262 907.9 672 66.8
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 7.8e-262 907.1 672 74.0
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 2.3e-261 905.6 672 75.0
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 6.6e-261 904.0 670 66.9
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 8.7e-261 903.7 672 74.9
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 2.5e-260 902.1 673 75.3
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 3.3e-260 901.7 674 75.8
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 1.3e-259 899.8 672 74.6
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 2.8e-259 898.7 669 67.3
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.4e-258 895.6 688 73.0
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 2.4e-258 895.6 673 75.3
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 3.1e-258 895.2 670 72.4
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.2e-256 889.0 697 72.0
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 2.9e-256 888.6 673 74.1
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 5.4e-255 884.4 659 66.2
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 6.0e-254 880.9 675 72.4
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.3e-253 879.0 675 72.7
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 8.7e-253 877.1 670 70.9
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 3.3e-252 875.2 670 71.2
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 7.4e-252 874.0 670 70.9
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 7.4e-252 874.0 670 70.3
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 7.4e-252 874.0 670 70.3
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 1.3e-251 873.2 670 71.0
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 2.8e-251 872.1 670 70.7
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 6.2e-251 870.9 670 70.6
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 8.1e-251 870.5 672 72.9
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.4e-250 869.8 710 71.1
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 3.1e-250 868.6 670 70.3
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 1.5e-249 866.3 670 71.6
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 2.0e-249 865.9 673 72.1
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 2.6e-249 865.5 673 73.6
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 5.8e-249 864.4 670 70.3
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.2e-248 862.4 670 70.0
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.9e-248 862.1 670 70.1
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.4e-247 859.0 671 70.6
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 2.7e-246 855.5 669 71.2
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 3.5e-246 855.1 670 69.0
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 9.6e-244 847.0 672 69.6
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 2.6e-241 839.0 714 65.3
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 5.8e-241 837.8 626 73.2
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 5.7e-236 821.2 672 71.3
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 7.4e-236 820.8 670 68.5
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.3e-235 820.1 672 71.1
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 1.1e-234 817.0 670 68.8
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 2.4e-234 815.8 672 69.5
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.1e-234 815.5 672 69.5
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 3.4e-233 812.0 689 58.2
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.0e-232 810.4 563 71.8
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.9e-231 806.2 633 73.0
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 2.5e-231 805.8 721 58.8
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 3.6e-230 802.0 668 69.3
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 1.3e-227 793.5 581 76.4
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 2.2e-227 792.7 670 68.4
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 2.4e-226 789.3 557 77.9
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 5.7e-220 768.1 631 71.2
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 5.7e-220 768.1 671 68.4
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 5.9e-217 758.1 668 67.1
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 6.5e-216 754.6 668 63.8
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 6.5e-216 754.6 672 64.7
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 4.4e-212 741.9 711 61.5
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 9.4e-207 724.2 571 64.6
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.4e-165 587.4 678 53.8
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 3.1e-165 586.3 425 68.5
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 1.4e-162 577.4 681 52.9
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 5.1e-160 568.9 682 50.3
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 3.5e-153 546.2 393 66.2
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 4.3e-151 539.3 442 64.9
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.7e-147 527.3 572 54.7
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 3.5e-145 519.6 345 75.4
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 1.7e-144 517.3 444 69.8
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 3.9e-136 489.6 430 68.8
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 2.9e-115 420.2 670 45.1
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 7.4e-103 379.0 276 69.2
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 2.2e-99 367.5 376 54.3
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 2.0e-76 291.2 252 79.4
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 2.8e-65 254.2 146 82.2
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 4.4e-63 246.9 157 69.4
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 1.1e-61 242.3 197 60.4
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 2.7e-60 237.7 569 30.1
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 5.2e-56 223.4 558 30.3
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 5.8e-55 219.9 124 79.0
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.6e-52 210.3 157 66.2
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 7.8e-52 209.5 668 29.8
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 2.1e-41 174.9 239 59.4
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 5.2e-40 170.2 137 65.7
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.9e-38 164.5 250 57.6
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 7.8e-36 156.4 421 29.7
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 3.1e-32 144.4 102 73.5
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 2.1e-28 131.7 102 72.5
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 2.7e-28 131.3 91 76.9
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 7.9e-28 129.8 90 76.7
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 8.7e-27 126.3 117 61.5
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 1.9e-26 125.2 90 75.6
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.3e-25 122.5 85 68.2
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 8.1e-25 119.8 87 70.1
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 1.5e-23 115.5 104 52.9
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 5.4e-21 107.1 89 57.3
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 7.1e-21 106.7 112 53.6
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 9.3e-21 106.3 72 68.1
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 9.3e-21 106.3 89 64.0
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 7.4e-18 96.7 69 72.5
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 5.3e-16 90.5 73 57.5
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 2.6e-15 88.2 55 67.3
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 7.6e-15 86.7 124 69.4
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 2.2e-14 85.1 60 58.3
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 2.2e-14 85.1 60 58.3
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 3.8e-14 84.3 271 32.5
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-12 79.3 124 39.5
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 5.1e-11 73.9 45 80.0
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 6.2e-09 67.0 50 64.0
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 5.3e-08 63.9 42 71.4
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 5.3e-08 63.9 44 72.7
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 1.7e-06 58.9 39 74.4
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 1.7e-06 58.9 39 74.4
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 1.7e-06 58.9 39 74.4


User provided reference genes

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