Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 4.4e-232 807.7 460 100.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 1.6e-168 596.7 464 72.6
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 2.9e-167 592.4 465 72.7
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.5e-166 590.1 463 71.7
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 2.5e-166 589.3 466 71.0
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 1.6e-165 586.6 472 70.1
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 4.4e-163 578.6 460 70.0
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 1.1e-161 573.9 466 65.9
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 1.8e-161 573.2 414 77.3
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.8e-161 573.2 461 69.8
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.1e-161 572.0 460 69.8
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 7.0e-161 571.2 461 70.5
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.2e-160 570.5 469 69.9
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 4.5e-160 568.5 409 77.8
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.9e-159 565.8 460 65.0
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 3.8e-159 565.5 464 70.0
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 3.8e-159 565.5 463 63.9
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 5.0e-159 565.1 460 70.9
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.1e-158 563.9 468 69.0
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 2.5e-158 562.8 489 64.0
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 2.5e-158 562.8 489 66.9
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 2.5e-158 562.8 478 62.1
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 3.2e-158 562.4 468 70.5
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.2e-158 562.0 469 62.3
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 9.5e-158 560.8 462 69.5
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 2.7e-157 559.3 461 62.7
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 3.6e-157 558.9 467 67.9
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 6.1e-157 558.1 463 61.8
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 8.0e-157 557.8 491 67.4
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.4e-156 557.0 397 78.1
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 4.0e-156 555.4 410 69.3
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 4.0e-156 555.4 468 68.8
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 3.4e-155 552.4 462 67.5
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 4.4e-155 552.0 463 62.0
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.2e-154 549.7 461 67.9
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.2e-154 549.7 484 63.0
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 2.8e-154 549.3 470 62.3
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 3.7e-154 548.9 465 65.6
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 4.9e-154 548.5 483 59.4
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 4.9e-154 548.5 462 61.9
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 6.3e-154 548.1 464 69.0
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.4e-153 547.0 494 65.4
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 3.1e-153 545.8 486 58.4
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 9.2e-153 544.3 494 66.2
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.2e-152 543.9 468 59.4
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 1.2e-152 543.9 485 64.7
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 2.0e-152 543.1 462 59.7
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 5.9e-152 541.6 463 60.3
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 5.9e-152 541.6 462 66.2
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 1.0e-151 540.8 485 68.0
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.7e-151 540.0 536 54.3
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 2.3e-151 539.7 487 60.4
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 3.8e-151 538.9 469 60.3
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 5.0e-151 538.5 500 57.8
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 5.0e-151 538.5 500 57.8
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 6.6e-151 538.1 462 66.2
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 1.1e-150 537.3 464 66.2
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 7.3e-150 534.6 505 57.8
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.6e-149 533.5 507 57.0
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 1.4e-148 530.4 472 65.0
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 3.7e-146 522.3 407 67.1
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.8e-145 520.0 405 63.5
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 1.6e-144 516.9 509 55.6
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 4.6e-144 515.4 491 63.3
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.5e-142 510.4 376 67.0
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 1.9e-142 510.0 391 64.2
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 3.3e-142 509.2 407 63.9
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.6e-141 505.8 498 62.7
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 3.6e-141 505.8 389 65.8
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 3.6e-141 505.8 461 63.1
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 8.0e-141 504.6 493 60.9
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 3.7e-138 495.7 377 65.3
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.1e-137 494.2 394 62.4
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 5.4e-137 491.9 482 54.6
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 7.8e-136 488.0 405 62.2
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 7.8e-136 488.0 408 60.3
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 6.6e-135 485.0 498 58.6
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.5e-134 483.8 390 62.8
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 4.7e-133 478.8 379 62.3
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 6.2e-133 478.4 437 59.5
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.6e-131 473.0 377 61.5
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.4e-131 472.6 410 60.0
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 9.8e-131 471.1 329 80.5
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 8.3e-130 468.0 408 67.9
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 5.4e-129 465.3 467 55.2
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 9.2e-129 464.5 377 62.9
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.7e-128 463.0 391 60.1
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 4.6e-128 462.2 481 53.8
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 4.3e-126 455.7 469 58.4
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 5.6e-126 455.3 405 65.9
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 3.6e-125 452.6 499 51.5
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 1.5e-123 447.2 464 59.5
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 4.1e-121 439.1 462 51.5
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.2e-120 437.6 465 58.3
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 7.8e-120 434.9 389 57.6
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 8.6e-119 431.4 389 57.3
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.1e-118 431.0 392 57.1
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 9.9e-115 417.9 471 54.6
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.1e-113 414.5 410 62.0
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 3.2e-113 412.9 376 56.4
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 7.1e-113 411.8 405 62.2
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.0e-107 393.7 405 60.7
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 6.4e-106 388.7 434 51.8
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.6e-104 384.0 467 54.6
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.1e-100 371.3 466 48.1
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.3e-100 369.0 395 56.5
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 1.2e-96 357.8 406 54.2
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 8.7e-95 351.7 405 46.9
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 9.6e-94 348.2 283 61.8
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 2.2e-74 283.9 402 42.0
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 3.7e-69 266.5 396 47.5
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 3.7e-69 266.5 396 47.5
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 4.8e-69 266.2 250 67.6
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 6.9e-68 262.3 298 46.6
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 6.3e-61 239.2 248 51.6
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 1.7e-58 231.1 455 35.8
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.0e-55 221.9 214 57.5
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 6.3e-53 212.6 216 52.3
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 1.3e-50 204.9 214 52.3
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 4.7e-48 196.4 134 70.9
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 2.8e-45 187.2 239 45.2
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 6.3e-45 186.0 477 30.4
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 1.7e-42 177.9 204 60.3
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 2.9e-42 177.2 106 76.4
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 1.2e-40 171.8 186 50.0
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.8e-39 167.9 135 65.2
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 5.2e-39 166.4 103 75.7
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.8e-31 141.4 111 68.5
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 8.9e-31 139.0 74 83.8
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.7e-29 133.7 90 75.6
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.1e-28 132.1 265 32.8
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 3.2e-28 130.6 76 80.3
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 5.0e-26 123.2 107 57.9
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 1.4e-23 115.2 66 77.3
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 7.5e-22 109.4 481 24.5
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 4.9e-21 106.7 376 22.3
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.2e-20 102.4 76 59.2
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 3.6e-16 90.5 250 30.8
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 8.1e-16 89.4 394 24.4
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 8.1e-16 89.4 394 24.4
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 3.1e-15 87.4 398 22.4
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 5.2e-15 86.7 411 22.1
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 5.2e-15 86.7 427 22.7
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 4.4e-14 83.6 421 23.3
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 4.9e-13 80.1 39 82.1
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.9e-13 80.1 445 23.4
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.9e-13 80.1 445 23.4
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 1.1e-12 79.0 430 23.0
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 1.1e-12 79.0 55 65.5
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 1.4e-12 78.6 432 22.0
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 4.1e-12 77.0 255 26.7
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 4.1e-12 77.0 427 22.5
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 9.2e-12 75.9 441 21.3
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 9.2e-12 75.9 411 21.9
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 9.2e-12 75.9 248 27.4
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 9.2e-12 75.9 53 64.2
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 9.2e-12 75.9 251 27.1
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 1.6e-11 75.1 248 26.6
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 1.6e-11 75.1 248 26.2
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 6.0e-11 73.2 245 26.1
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 1.3e-10 72.0 248 26.6
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 2.3e-10 71.2 457 21.2
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 3.0e-10 70.9 415 21.0
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 6.6e-10 69.7 46 65.2
Psat7g237960 Pisum sativum HOM05D005401 ORTHO05D006582 1.5e-06 58.5 39 64.1
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.4e-06 57.0 107 29.9


User provided reference genes

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