Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.8e-274 947.6 488 100.0
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 3.5e-219 765.0 497 79.1
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 4.6e-203 711.4 508 75.8
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.2e-198 696.8 496 74.4
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 2.7e-195 685.6 501 72.9
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.0e-194 683.7 505 72.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 3.0e-194 682.2 514 71.4
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.6e-192 676.4 500 74.0
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.6e-192 675.2 497 72.2
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 4.8e-192 674.9 514 70.4
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.4e-191 673.3 493 72.6
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.4e-191 673.3 495 73.3
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 2.0e-190 669.5 495 74.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.6e-190 669.1 497 71.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 3.4e-190 668.7 514 70.2
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 4.5e-190 668.3 508 71.7
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 4.5e-190 668.3 501 72.1
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.6e-190 667.5 488 73.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.9e-189 665.6 486 74.9
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 3.2e-188 662.1 496 71.0
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.2e-188 661.8 488 73.8
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 7.1e-188 661.0 514 69.6
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 9.3e-188 660.6 499 71.5
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 2.7e-187 659.1 496 70.8
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.6e-187 658.3 505 70.3
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.0e-186 657.1 491 71.7
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.3e-186 656.0 491 71.3
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 8.7e-186 654.1 497 70.8
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.1e-185 653.7 508 70.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.1e-185 653.7 492 72.2
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 9.6e-185 650.6 496 69.6
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.4e-183 646.7 493 70.4
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.4e-183 646.0 546 65.4
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 6.9e-183 644.4 479 72.7
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 7.6e-182 641.0 494 70.0
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 6.5e-181 637.9 499 67.9
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 1.4e-180 636.7 478 72.4
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.6e-179 633.3 485 68.5
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 3.5e-179 632.1 493 68.8
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 4.6e-179 631.7 490 69.4
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 6.0e-179 631.3 512 68.2
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.3e-178 629.4 493 69.2
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.1e-177 627.1 490 69.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 3.3e-177 625.5 490 66.7
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.3e-177 625.2 492 69.9
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 7.4e-177 624.4 524 66.2
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.6e-176 623.2 491 69.9
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.6e-176 623.2 490 69.4
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 2.8e-176 622.5 505 67.9
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 6.3e-176 621.3 502 67.3
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 6.3e-176 621.3 490 69.6
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.8e-175 619.8 490 69.4
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 3.1e-175 619.0 505 66.5
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.5e-174 616.7 400 79.8
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.6e-174 615.9 500 68.4
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.3e-173 613.6 464 70.3
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.2e-173 612.8 506 66.2
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 2.2e-173 612.8 517 66.5
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 2.2e-173 612.8 509 65.4
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 3.8e-173 612.1 508 65.9
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 8.4e-173 610.9 505 66.1
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.1e-172 610.5 491 68.0
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.2e-172 609.0 505 66.3
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 4.2e-172 608.6 503 66.2
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 4.2e-172 608.6 475 70.5
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.7e-171 605.9 459 69.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.7e-171 605.9 509 64.0
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 2.7e-171 605.9 484 68.0
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 2.7e-171 605.9 497 67.8
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.9e-171 604.4 442 71.0
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.3e-170 602.8 441 72.3
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.9e-170 602.1 441 70.7
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.9e-169 599.7 480 67.7
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 2.2e-168 596.3 508 65.0
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 2.4e-167 592.8 490 67.1
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 3.4e-166 589.0 416 73.6
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.9e-164 583.2 379 79.2
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 4.2e-164 582.0 515 61.9
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 3.0e-162 575.9 418 70.8
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 2.2e-157 559.7 497 63.2
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 5.0e-157 558.5 445 68.8
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 6.5e-157 558.1 439 67.7
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.5e-156 556.2 464 65.5
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 5.5e-156 555.1 509 61.9
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.9e-154 548.9 555 57.1
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.0e-153 546.6 490 61.8
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.6e-150 536.2 427 67.2
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 8.5e-149 531.2 367 72.2
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.9e-148 530.0 491 62.5
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.2e-148 528.9 432 64.6
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 2.1e-147 526.6 448 66.3
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.8e-144 516.2 378 73.0
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 2.1e-139 500.0 391 65.0
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.3e-133 480.7 485 55.9
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 5.0e-133 478.8 488 56.4
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.0e-130 471.1 439 58.3
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 7.5e-129 464.9 367 68.7
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 4.9e-128 462.2 358 64.8
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.1e-127 461.1 452 58.0
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 1.3e-120 437.6 311 71.4
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.7e-117 427.2 354 62.7
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 4.3e-116 422.5 345 61.7
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.8e-113 411.4 379 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 4.7e-107 392.5 433 50.8
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 8.1e-107 391.7 427 51.8
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.1e-106 391.3 438 48.9
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.9e-101 372.9 528 43.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.6e-101 371.7 395 51.6
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.3e-100 368.6 260 73.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.1e-98 364.8 277 68.6
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.4e-98 364.4 363 60.6
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.2e-97 361.3 402 49.8
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 7.3e-84 315.5 337 52.8
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 4.9e-80 302.8 426 43.2
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.2e-72 277.3 361 45.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.9e-72 276.9 245 62.4
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.7e-64 251.1 446 36.8
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 7.4e-60 235.7 285 50.2
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 4.2e-55 219.9 485 32.4
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.0e-37 162.2 191 52.4
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 6.3e-35 152.9 111 72.1
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.2e-33 148.7 135 62.2
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 4.0e-29 133.7 129 59.7
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.8e-24 117.1 183 39.3
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 8.0e-22 109.4 126 54.8
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.3e-19 102.1 106 51.9
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.7e-19 101.7 201 34.8
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 7.7e-17 92.8 89 52.8
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.1e-15 89.0 125 49.6
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 5.5e-15 86.7 62 72.6
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.6e-14 85.1 98 45.9
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.2e-11 74.7 147 40.8
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 3.7e-11 73.9 68 52.9
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 6.3e-11 73.2 55 65.5
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 5.9e-09 66.6 153 35.3
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 2.8e-06 57.8 59 49.2


User provided reference genes

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