Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.5e-97 358.2 172 100.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.7e-62 241.5 170 67.6
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.4e-60 235.0 172 62.8
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.1e-58 230.3 170 66.5
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.4e-58 229.9 178 62.9
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 7.1e-58 227.6 192 58.9
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 7.1e-58 227.6 172 62.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 7.1e-58 227.6 182 56.0
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 7.1e-58 227.6 170 62.4
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 7.1e-58 227.6 172 60.5
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 7.1e-58 227.6 176 62.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 9.3e-58 227.3 182 56.0
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.2e-57 226.9 172 61.6
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.6e-57 226.5 170 64.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.6e-57 226.5 170 64.1
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.6e-57 226.5 172 61.0
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-57 226.1 170 64.1
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.1e-57 226.1 173 63.0
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.7e-57 225.7 170 63.5
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.7e-57 225.7 170 63.5
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 3.5e-57 225.3 172 62.8
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.6e-57 224.9 173 60.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 7.8e-57 224.2 192 56.2
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 7.8e-57 224.2 182 56.0
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.0e-56 223.8 175 62.3
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-56 223.4 170 62.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.3e-56 222.6 192 58.3
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.6e-56 221.1 172 61.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 5.6e-55 218.0 177 63.3
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.6e-55 218.0 180 61.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 4.8e-54 214.9 167 59.9
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 8.1e-54 214.2 176 58.0
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 8.1e-54 214.2 171 60.8
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 3.1e-53 212.2 172 56.4
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.0e-53 211.8 172 57.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.3e-53 211.5 171 59.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.5e-52 209.9 172 57.0
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.0e-52 209.5 159 61.0
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.5e-52 208.4 170 57.6
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 7.6e-52 207.6 172 58.7
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-51 206.8 137 70.8
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-51 206.5 170 56.5
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.9e-51 205.7 173 59.5
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 2.9e-51 205.7 170 58.2
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 2.9e-51 205.7 170 58.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.9e-51 204.9 176 56.8
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 6.4e-51 204.5 199 50.8
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 8.4e-51 204.1 168 56.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.1e-50 203.8 168 57.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-50 203.4 172 57.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.9e-50 203.0 159 57.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.9e-50 203.0 158 62.0
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.2e-50 202.2 161 60.2
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 5.4e-50 201.4 161 59.0
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 5.4e-50 201.4 161 59.0
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 5.4e-50 201.4 161 59.0
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 5.4e-50 201.4 161 59.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.3e-50 200.7 172 52.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-49 200.3 199 49.7
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.2e-49 200.3 160 58.1
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.2e-49 200.3 185 54.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.2e-49 200.3 172 54.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.7e-49 199.1 161 59.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.7e-49 199.1 161 59.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 3.5e-49 198.7 137 67.2
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.5e-49 198.7 136 68.4
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.5e-49 198.7 133 66.9
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 4.6e-49 198.4 137 67.2
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 4.6e-49 198.4 135 68.1
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 7.9e-49 197.6 166 55.4
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.0e-48 197.2 133 63.9
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.3e-48 196.8 172 51.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.8e-48 196.4 170 57.1
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 3.0e-48 195.7 137 66.4
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.0e-48 195.7 120 72.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.9e-48 195.3 163 56.4
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-47 193.7 146 63.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-47 193.4 161 56.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-47 193.4 161 57.8
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.9e-47 193.0 120 71.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.5e-47 192.6 161 57.1
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.5e-47 192.6 161 57.1
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.5e-47 192.6 161 57.1
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.5e-47 192.6 162 58.0
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.3e-47 192.2 165 55.8
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 4.3e-47 191.8 172 54.7
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 5.6e-47 191.4 139 63.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.8e-46 189.1 137 63.5
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.8e-46 189.1 137 63.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.7e-46 188.7 139 62.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.8e-46 188.3 120 70.0
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.8e-46 188.3 171 53.2
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.8e-46 188.3 124 65.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.2e-46 188.0 171 53.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.2e-46 188.0 114 71.9
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 8.1e-46 187.6 113 71.7
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-45 187.2 169 52.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.8e-45 186.4 169 54.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.4e-45 186.0 114 70.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 9.0e-45 184.1 167 54.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 9.0e-45 184.1 123 67.5
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.6e-44 182.6 164 53.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.6e-44 181.0 162 53.7
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 9.9e-44 180.6 118 65.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.8e-43 178.7 170 51.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 8.4e-43 177.6 139 59.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.1e-42 177.2 164 51.2
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.9e-42 176.4 176 47.7
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.2e-42 175.6 176 47.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 4.2e-42 175.3 167 54.5
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 7.1e-42 174.5 171 50.3
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.5e-41 172.2 170 48.8
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 4.6e-41 171.8 133 54.9
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.6e-41 171.8 119 63.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 4.6e-41 171.8 120 64.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 6.0e-41 171.4 156 52.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.3e-40 169.5 169 52.1
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.0e-40 169.1 122 57.4
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.1e-40 168.3 114 65.8
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 8.7e-40 167.5 164 52.4
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.7e-40 167.5 120 62.5
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 8.7e-40 167.5 119 59.7
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.5e-39 166.8 163 52.8
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-39 166.8 114 64.9
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.5e-39 166.0 120 60.0
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.3e-39 165.6 122 63.9
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.3e-39 165.6 114 63.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.3e-39 165.2 127 57.5
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.1e-38 162.9 120 58.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 3.7e-38 162.2 122 54.9
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.2e-38 161.4 166 47.0
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.1e-37 160.6 137 55.5
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.2e-36 157.1 182 44.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-34 149.4 109 60.6
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.2e-34 148.7 114 56.1
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.5e-34 148.3 125 55.2
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.5e-34 148.3 171 40.4
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.2e-33 147.1 155 47.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 2.7e-33 146.0 127 54.3
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.6e-33 145.2 103 61.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.0e-32 144.1 118 51.7
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.9e-31 139.8 132 50.8
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.3e-31 139.0 124 50.8
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 5.7e-31 138.3 116 55.2
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 4.1e-29 132.1 116 50.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.0e-27 127.5 100 57.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.5e-27 124.8 84 59.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.9e-26 123.2 93 61.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.2e-26 122.5 113 49.6
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.2e-26 122.5 110 53.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.2e-26 122.5 96 59.4
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.6e-25 118.6 109 51.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.8e-24 116.7 144 47.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 3.9e-24 115.5 111 47.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 5.1e-24 115.2 127 45.7
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 6.7e-24 114.8 132 42.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.7e-22 109.0 118 41.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.8e-22 108.6 119 42.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.3e-22 108.2 107 47.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-20 102.8 119 42.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-20 102.8 119 42.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.2e-19 99.8 76 60.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 6.5e-19 98.2 64 71.9
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.5e-19 98.2 68 55.9
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-18 96.3 125 43.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-17 94.0 119 39.5
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 4.7e-17 92.0 125 42.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 5.3e-13 78.6 101 35.6
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 8.5e-11 71.2 82 43.9
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.9e-10 70.1 46 65.2
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.1e-09 66.6 42 64.3
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 2.7e-09 66.2 72 43.1


User provided reference genes

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